Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0127
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   1.9  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.5  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   3.3  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   4.3  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   5.7  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.7  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   5.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   5.7  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   5.7  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   5.7  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    25   7.5  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   10.0 

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 276 IQCTRCLAFGHGRKFCTESVDRCSHCGG-PHLREKCADFIAGTEPQCCNCSHSG 434
           + C  C ++GH  + CT  V +C  CG   H   +C    A     C  C+  G
Sbjct: 116 MNCYACGSYGHQARDCTMGV-KCYSCGKIGHRSFECQQ--ASDGQLCYKCNQPG 166


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 299 IWTWSKILHRECGQMQSLWRTASAREMRRLHRRDRTAVLQ 418
           IW+ S    RE  Q++  W + S  E R L + ++ AVLQ
Sbjct: 250 IWSSSNTEERE--QIREFWLSLSESERRSLVKVEKEAVLQ 287


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 42  PSDDEEIIKALHIQNEDIFRDLSQEDKETTIKFKKRTKNP 161
           PS    +  ++H++  + +   S E K+++ K+K R +NP
Sbjct: 823 PSTQISLAPSIHVEGLETYS--SSERKDSSNKYKSRKRNP 860


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 30  DVFLPSDDEEIIKALHIQNEDIFRDLSQEDKETTIKFKKRTKNPK 164
           D+    DD E +  +   N +   + SQ D E   K KK+ KN K
Sbjct: 402 DIANQLDDREELTEITSFNWETLEEQSQSDYEIDKKKKKKKKNNK 446


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 509  SASQVIPLFWYRAFGAKSVMVGLPQPR 429
            S    +  F +  FGAK+V +G+P+ R
Sbjct: 1206 STQMTLNTFHFAGFGAKNVTLGIPRLR 1232


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 337 TDAVTVEDRICARNAQTSSQGPNRSAATAHTLGCGRPTITLLAP 468
           TD + V + +   N    SQ P+  A T + L C      L  P
Sbjct: 20  TDWIDVIETMRETNESPKSQNPSEEATTVNELSCEAKPKLLFTP 63


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -2

Query: 140 ELNGRFFIFLRQVPKYILVL 81
           ELN RFF  L  VP  ILVL
Sbjct: 238 ELNSRFFHGLTLVPSLILVL 257


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 394 QGPNRSAATAHTLGCGRPTITLLAPNARYQKSGITWLALTQHMHNL 531
           Q P+ + ++   +    P++T          +  TWL L QHMH L
Sbjct: 19  QDPSDAQSSPTFVPSANPSLTTPWLQTTPSANRPTWLPLQQHMHQL 64


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 200 YHGTNLDNDVRRFGIFCPLLELNGRFFIFLRQV--PKYI 90
           YH T ++N +   GI    +     +FI+LR+V  PK++
Sbjct: 349 YHFTTIENGLVYMGILVGSVLTVAFYFIYLRKVMIPKFV 387


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +3

Query: 318 FCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNC 422
           FC   VD C+ C  P              P C NC
Sbjct: 74  FCKLCVDICNGCSTPICEFNAVSNSQANHPCCSNC 108


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 173 VRRFG-IFCPLLELNGRFFIFLRQVPKYILVLNMKR 69
           V+RFG  +CPL E   R  + L   P  ++ L +KR
Sbjct: 111 VKRFGHAYCPLDEALSRSVVDLSGRPYAVIDLGLKR 146


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 39  LPSDDEEIIKALHIQNEDIFRDLSQE 116
           +P  +EEI+  LH++ E+   D+ Q+
Sbjct: 70  IPDYNEEIVVRLHLEEENNLSDILQK 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,295
Number of Sequences: 5004
Number of extensions: 55878
Number of successful extensions: 194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)