Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0127
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    31   0.43 
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    31   0.43 
Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    27   6.9  
AF040655-9|AAB95038.1|  288|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z81529-3|CAB04300.1|  224|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z81529-1|CAB04294.1|  224|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 282 CTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADF 389
           C  C  +GH    C+     C++CG P H   +CA +
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECASW 240


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 282 CTRCLAFGHGRKFCTESVDRCSHCGGP-HLREKCADF 389
           C  C  +GH    C+     C++CG P H   +CA +
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECASW 240


>Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +2

Query: 59  DN*SASYSKRGYI*GLVSGR*RNDH*VQEEDKKSQNGARHCPGWSRGMAKDDGGWG 226
           DN    YSK GY     S   RND         + N   +  G + G + + GGWG
Sbjct: 412 DNFGGGYSKNGY----GSNNNRNDGWGSSSSNNNNNNNNNNNGGTGGYSNNGGGWG 463


>Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +2

Query: 59  DN*SASYSKRGYI*GLVSGR*RNDH*VQEEDKKSQNGARHCPGWSRGMAKDDGGWG 226
           DN    YSK GY     S   RND         + N   +  G + G + + GGWG
Sbjct: 412 DNFGGGYSKNGY----GSNNNRNDGWGSSSSNNNNNNNNNNNGGTGGYSNNGGGWG 463


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 252 RVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPH 365
           R++    +  C  CL  GH R  C+     C+HC G H
Sbjct: 338 RIQKAREIGLCFGCLRSGHQRSKCSRP-RTCNHCKGNH 374


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 42  PSDDEEIIKALHIQNEDIFRDLSQEDKET-TIK 137
           P ++EEI+K L ++NED  R      KE+ T+K
Sbjct: 212 PEEEEEIVKQLIVRNEDHIRQSLMVKKESQTVK 244


>AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical
           protein Y67A10A.6 protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
 Frame = +3

Query: 201 WQRMTEAGALYLDLQRI-RVEDQSPLIQCTRCLAFGHGRKF-CTE-SVDRCSHCGGPHLR 371
           W      G L++D  R+  +   S +  C+ C + G    F C     D+CS C G  ++
Sbjct: 118 WDFEVMPGHLFVDQVRVFEMPGSSQINPCSACNSDGTIHCFHCRGYGTDKCSFCRGTGMK 177

Query: 372 EKCADFIAGTEPQCCNCSHSGLRK 443
              A     T P      H+ L +
Sbjct: 178 SGVAHPAVYTHPMIATFPHADLSR 201


>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 151 QKIPKRRTSLSRLVPWYGKG*RRLGPSTWTC--KGSESRTSLRSSNARGASHLDMVEN 318
           QK  +R   +S L P Y        P TW C  K +   +++   ++ G   + M++N
Sbjct: 221 QKEYRRLIRMSMLFPVYTGADTHFAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDN 278


>AF040655-9|AAB95038.1|  288|Caenorhabditis elegans Hypothetical
           protein T24E12.3 protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 93  IFRDLSQEDKETTIKFKKRTKNPKTAHVIVQVGPVV 200
           +F + S  DKET  KF +  KN K   +I  + P+V
Sbjct: 4   VFAENSPADKETLAKFHQWFKNHKKLELISTMFPMV 39


>Z81529-3|CAB04300.1|  224|Caenorhabditis elegans Hypothetical
           protein F35E8.4 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = -2

Query: 476 RAFGAKSVMVGLPQPRV*AVAALRFGPCDEVCAFLAQMRS-STVTASVHTLGAKFSTMSK 300
           RAF   S    LP P V  V  +    C + C +  Q    +   A   ++     T ++
Sbjct: 50  RAFRCYSTATALPAPIVEDVKRVAINGCPKTCGYCCQTSEFNCANAEFPSIKCSDITPAQ 109

Query: 299 CEAP 288
           C +P
Sbjct: 110 CRSP 113


>Z81529-1|CAB04294.1|  224|Caenorhabditis elegans Hypothetical
           protein F35E8.1 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = -2

Query: 476 RAFGAKSVMVGLPQPRV*AVAALRFGPCDEVCAFLAQMRS-STVTASVHTLGAKFSTMSK 300
           RAF   S    LP P V  V  +    C + C +  Q    +   A   ++     T ++
Sbjct: 50  RAFRCYSTATALPAPIVEDVKRVAINGCPKTCGYCCQTSEFNCANAEFPSIKCSDITPAQ 109

Query: 299 CEAP 288
           C +P
Sbjct: 110 CRSP 113


>Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical
           protein ZC443.1 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 220 LGPSTWTCKGSESRTSLRSSNARGASHLD 306
           +G  TW   G E +T +R++   G  H+D
Sbjct: 19  IGLGTWQMTGEEGKTVIRNAVLAGYRHID 47


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 48  DDEEIIKALHIQNEDIFRD--LSQEDKETTIKFKKRTKNPK 164
           ++EEI+K + ++NED  R   + +++ +T  + K + K+ K
Sbjct: 207 EEEEIVKQVIVRNEDHIRQSLMVKKESQTVKEVKDKNKDKK 247


>U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical
           protein B0280.2 protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 48  DDEEIIKALHIQNEDIFRDLSQEDKETTIKFKKRTKN 158
           ++EEI+K L ++NED  R      KE+    + + KN
Sbjct: 201 EEEEIVKQLIVRNEDHIRQSLMVKKESQTVKEVKDKN 237


>AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical
           protein H34C03.2 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 469 NARYQKSGITWLALTQHMHNLNAGHYTA 552
           N  ++K+    +A+++H  +L+ GHYTA
Sbjct: 779 NPNHEKAIYDLIAVSRHYGSLSGGHYTA 806


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,657,605
Number of Sequences: 27780
Number of extensions: 346954
Number of successful extensions: 1165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)