Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0127
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23680.1 68418.m02776 sterile alpha motif (SAM) domain-contai...    29   2.1  
At5g05190.1 68418.m00553 expressed protein similar to unknown pr...    29   2.1  
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s...    28   4.9  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    27   6.4  
At3g03260.1 68416.m00322 homeobox-leucine zipper family protein ...    27   6.4  
At5g20830.1 68418.m02474 sucrose synthase / sucrose-UDP glucosyl...    27   8.5  
At1g11300.1 68414.m01298 S-locus lectin protein kinase family pr...    27   8.5  

>At5g23680.1 68418.m02776 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 295

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 48  DDEEIIKALHIQNEDIFRDLSQEDKETTIKFKKRTKN 158
           ++EE  +   +  E+ FRD S+ED E+ +K ++R +N
Sbjct: 180 EEEEEEEDEELGGEEGFRDFSREDSESPMKERRRYEN 216


>At5g05190.1 68418.m00553 expressed protein similar to unknown
           protein (emb|CAB88044.1)
          Length = 615

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 410 LRFGPCDEVCAFLAQMRSSTVTASVHTLGAKFSTMSKCEAP 288
           LR G C  V  F  Q R+  V A  H + A  ++ S  E+P
Sbjct: 525 LRCGTCTTVLRFSLQSRNHLVPAVTHDINANRNSNSTSESP 565


>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-1) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
          Length = 279

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 217 RLGPSTWTCKGSESRTSLRSSNARGAS 297
           RL P+ WT  G+E+ T   S   RG++
Sbjct: 22  RLIPARWTSTGAEAETKASSGGGRGSN 48


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 451 WSAFRNPECEQLQHCGSVPAMKSAHFSRRC 362
           WS++  P C   + CG++   K   F +RC
Sbjct: 205 WSSWACPSCRICEGCGTLGDPKKFMFCKRC 234


>At3g03260.1 68416.m00322 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           L1 specific homeobox gene ATML1/ovule-specific homeobox
           protein A20, GB:CAB36819
          Length = 699

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +1

Query: 268 LRSSNARGASHLDMVENFAPRVWTDAVTVEDRIC-ARNAQTSSQGPNRSAATAHTLGCGR 444
           LR  NAR   H D + NF  +   +  TVED +    +    S G N       +   G 
Sbjct: 133 LRFENARLKDHRDRISNFVDQHKPNEPTVEDSLAYVPSLDRISYGINGGNMYEPSSSYGP 192

Query: 445 PTITLLAP 468
           P   ++ P
Sbjct: 193 PNFQIIQP 200


>At5g20830.1 68418.m02474 sucrose synthase / sucrose-UDP
           glucosyltransferase (SUS1) identical to SP|P49040
           Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
           glucosyltransferase) {Arabidopsis thaliana}
          Length = 808

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +1

Query: 106 CLRKIKKRPLSSRRGQKIPKRRTSLSRLVPWYGKG*RRLGPSTWTCKGSESRTSLRSS-- 279
           C+ K KK+P+     +    R  +LS LV WYGK  R    +     G + R   + +  
Sbjct: 565 CVLKDKKKPILFTMARL--DRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEE 622

Query: 280 NARGASHLDMVENF 321
            A      D++E +
Sbjct: 623 KAEMKKMYDLIEEY 636


>At1g11300.1 68414.m01298 S-locus lectin protein kinase family protein
            contains protein kinase domain, Pfam:PF00069; contains
            S-locus glycoprotein family domain, Pfam:PF00954
          Length = 1635

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -3

Query: 400  VPAMKSAHFSR-----RCGPPQ*LHLSTLSVQNFRPCPNARHLVHWMSGDWSSTLI 248
            VPA +   +SR      C P +  H S   ++ FRP    R+L+ W +G+WS   I
Sbjct: 1104 VPATECDIYSRCGQYTTCNPRKNPHCSC--IKGFRP----RNLIEWNNGNWSGGCI 1153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,870,534
Number of Sequences: 28952
Number of extensions: 321126
Number of successful extensions: 1103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)