Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0126
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   1.9  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   3.4  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   3.4  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    26   4.5  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    25   7.8  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.8  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 107 SKLHQTQNPFETSYKPSKIIGEEENGISAEITERD 211
           SK+ ++QN FE   K  KI    E GI A  TE++
Sbjct: 49  SKITKSQNLFERHGKNKKIAVNSEYGIIAVATEKN 83


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = +3

Query: 267 IIREDYMVEAMEIVEMYCDLILARFGLVTQMKELDEGLAEAISTLIWVAPRMHTDVQELK 446
           I+R DY V     +   C++I A+F    ++K  +   A+ +   I +        Q LK
Sbjct: 468 ILRNDYYVYLSHNLLTVCNIIKAQF---QRLKNANSIPAKQVENYITLVNSASLSKQYLK 524

Query: 447 IISDLLTAKYGKVYADA 497
            I D ++++  +V+A A
Sbjct: 525 SIVDGVSSRLEEVFAFA 541


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 528 HLLCSHSRLYMHQHTPFHILQ*ASQILFLILVHLCAS 418
           HL     + Y   H P++ L  A Q L +IL+ LC+S
Sbjct: 730 HLWYLLYQAYSSAHRPYNSLLCAFQSLKIILIRLCSS 766


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 288 VEAMEIVEMYCDLI-LARFGLVTQMKELDEGLAEAISTLIWVAPRM 422
           ++A  I+ M   L+ LA FG+  Q++ L +   + + T  W+AP +
Sbjct: 128 IKAANILTMKDGLVKLADFGVSGQLESLRDKNDDFVGTPFWMAPEV 173


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 431 ICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSL 291
           I ++P  +P +  Y  SK F   L + + T+P        +  FH L
Sbjct: 195 IMLYPEEHPER--YKLSKAFANILGIREGTRPDIVSYLWQYIKFHRL 239


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 563 WTVHRHFVLQFVTYCVHILASTCISIH-LSIF---CSEQVRYYF 444
           W    +F+  F  +C  IL +TCI +  ++++   CSE   +++
Sbjct: 513 WFHPLYFMFGFSFFCFGILVTTCIMVSIITVYFQLCSENYNWWW 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,234
Number of Sequences: 5004
Number of extensions: 55656
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)