Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0126
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17426| Best HMM Match : DUF292 (HMM E-Value=0) 208 4e-54
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24) 29 3.6
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 29 3.6
SB_16449| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2) 28 6.2
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 28 8.2
SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098) 28 8.2
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 28 8.2
>SB_17426| Best HMM Match : DUF292 (HMM E-Value=0)
Length = 249
Score = 208 bits (507), Expect = 4e-54
Identities = 97/175 (55%), Positives = 133/175 (76%)
Frame = +3
Query: 120 KLKTHLRLAINRXXXXXXXXXXXAQKSRKEIAEYIASGKSERAKIRVEHIIREDYMVEAM 299
KLKT+LRLAINR AQK+R+EIA+Y+ +GK ERA+IRVEHIIREDY+VEA+
Sbjct: 10 KLKTNLRLAINRLKLLEKKKTELAQKARREIADYLGNGKDERARIRVEHIIREDYLVEAL 69
Query: 300 EIVEMYCDLILARFGLVTQMKELDEGLAEAISTLIWVAPRMHTDVQELKIISDLLTAKYG 479
E++E+YCDL+LARFGL+ M DEG+ E++++LIWVAPR+ TDVQE K+I++ L K+G
Sbjct: 70 ELLELYCDLLLARFGLIETMTYCDEGMIESVTSLIWVAPRLQTDVQEFKVIAEQLGYKFG 129
Query: 480 KVYADACRGENVNTISDKLKHKMSVHSPPKILVEKYLIEIAKNYNVEYTPDEQVM 644
K +A +T++ +L K+S PPKILVE+YLIEIA+++NV++ PD VM
Sbjct: 130 KTFAHEAATNANDTVNPRLILKLSPKPPPKILVERYLIEIARSHNVQFEPDPLVM 184
>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 326 QVTVHFYYFHSLYHVVLSYYVLHSYFGTFTFT*SYVFS 213
QVT + Y + +Y + Y +++Y T+T+T +Y ++
Sbjct: 6 QVTFYIYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYT 43
>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
Length = 1423
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +3
Query: 423 HTDVQELKIISDLLTAKYGKVYADACRGENVNTISDKLKHKMSVHSPPKILVEKYLIEIA 602
H K + +++TA G + + G + IS + +H+PP ++ Y + A
Sbjct: 526 HQPYDSKKDLKEVITASSGNLTSPYYPGYYITDIS----YTWHIHAPPGHVIRIYFTDFA 581
Query: 603 KNYNVEYTPDEQVM 644
+V Y+ D V+
Sbjct: 582 LEEHVTYSKDNVVV 595
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 466 VSKSDIIFNSCTSVCILGATHIRVDIASARPSS---SSFI*VTRPNLA 332
+ +D SC+ V GAT I +D RPSS S F +T+P +A
Sbjct: 625 IGVTDATTTSCSFVKGQGATRIELDQVEVRPSSQKKSRFSLITKPAVA 672
>SB_16449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 71 KKLFKNKDVFDKSKLHQTQNPFETSYKPSKIIGEE 175
KKL +N+ F +LH+ + FE S+ P EE
Sbjct: 83 KKLRRNRTTFTTFQLHELERAFEKSHYPDVYTREE 117
>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
Length = 492
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -3
Query: 437 LYICVHPRSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVL-SYYVL 261
L++C HP + + + Y++++T LHL T+P+ ++ Y +L H+ ++
Sbjct: 57 LHLCTHPTTLMHATYYTYART---LLHLC--TQPTTLMHAPYYTYARTLLHLCTHPTTLM 111
Query: 260 HSYFGTFTFT 231
H+ + T+ T
Sbjct: 112 HAPYYTYART 121
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 27.9 bits (59), Expect = 8.2
Identities = 25/116 (21%), Positives = 43/116 (37%)
Frame = -3
Query: 596 FNEIFLN*YFRWTVHRHFVLQFVTYCVHILASTCISIHLSIFCSEQVRYYF*FLYICVHP 417
F I + YF + H++ +T+ H S I+ H F + ++F F I H
Sbjct: 938 FFSIITHHYFFVIITHHYIFSIITH--HYFFSI-ITHH---FFFSIITHHF-FFSIITHH 990
Query: 416 RSYPYQSGYSFSKTFIEFLHLSDKTKPS*YQVTVHFYYFHSLYHVVLSYYVLHSYF 249
+ + + F S T + + H Y+F + H + H YF
Sbjct: 991 FFFSIITHHYFFSIITHHFFFSIITHHFFFSIITHHYFFSIITHHYFFVIITHHYF 1046
>SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098)
Length = 533
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Frame = +3
Query: 348 VTQMKELDEGLAE-AISTLIWVAPRM---HTDVQELKIISDLLTAKYGKVYA-----DAC 500
+ ++ ELDEGL E +S++ R+ H VQE + + L T Y +VY+ + C
Sbjct: 157 IKELDELDEGLIEMLLSSITREDSRLSDEHQAVQEQRTVVLLHTLAYFRVYSGLSHDELC 216
Query: 501 RGENVNTISD 530
E+ N I +
Sbjct: 217 TLESTNLIDE 226
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 143 SYKPSKIIGEEENGISAEITERDC*IHSFR*K*TCQNKSGAHNKRGLHGRGY 298
S + K IG ++NGI A+I+ DC + C K+ A RG G+
Sbjct: 240 SLRNFKSIGNKQNGIFAQISSLDCKLQD-----ACLVKNSADGSRGDRVAGF 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,133,839
Number of Sequences: 59808
Number of extensions: 401600
Number of successful extensions: 1192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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