Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0126
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.6  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   3.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   4.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.4  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 510 NVNTISDKLKHKMSVHSPP 566
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 510 NVNTISDKLKHKMSVHSPP 566
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 510 NVNTISDKLKHKMSVHSPP 566
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 510 NVNTISDKLKHKMSVHSPP 566
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 510 NVNTISDKLKHKMSVHSPP 566
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 510 NVNTISDKLKHKMSVHSPP 566
           NV  I D ++HK S  +PP
Sbjct: 344 NVLDIDDDIRHKNSAANPP 362


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 510 NVNTISDKLKHKMSVHSPP 566
           NV  I D ++HK S  +PP
Sbjct: 412 NVLDIDDDIRHKNSAANPP 430


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 510 NVNTISDKLKHKMSVHSPP 566
           NV  I D ++HK S  +PP
Sbjct: 412 NVLDIDDDIRHKNSAANPP 430


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = -2

Query: 558 CAQ-TFCASICHLLCSHSRLYMH 493
           CA  T+    CH L  H R Y H
Sbjct: 47  CANCTYATKYCHSLKLHLRKYSH 69


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 140 TSYKPSKIIGEEENGISAEITE 205
           T +    I G+EENG+++E T+
Sbjct: 108 TIHSIHSIDGDEENGLTSESTD 129


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 161 IIGEEENGISAEITE 205
           I G+EENG+++E T+
Sbjct: 86  IDGDEENGLTSESTD 100


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 251 NKSGAHNKRGLHG 289
           N++G H   GLHG
Sbjct: 130 NQTGLHGLHGLHG 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,603
Number of Sequences: 438
Number of extensions: 3470
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)