Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0123
(647 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 23 2.2
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 22 3.8
AJ518941-1|CAD57735.1| 456|Tribolium castaneum homothorax protein. 22 5.0
DQ138189-1|ABA03053.1| 162|Tribolium castaneum bursicon protein. 21 6.6
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 21 6.6
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 21 6.6
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 21 6.6
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 21 6.6
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 23.0 bits (47), Expect = 2.2
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = +2
Query: 374 SSNHARVDTMLTYAELPH*VVITSWVVAPSPAQFRYNYT*NGDGTTSPKWVS 529
+ + R L Y E+ H + W V P + Y GD +WVS
Sbjct: 1667 AGEYTRAAGFLAYYEICHNIKTQGWTVVQDPNRRMGPYAYKGD-----QWVS 1713
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 22.2 bits (45), Expect = 3.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -1
Query: 587 MPKAKLHRPRRMPRNEQTAWRPILG*SY 504
MP +H P P Q A + I+G Y
Sbjct: 452 MPSQYIHEPWTAPEQVQRAAKCIIGKDY 479
>AJ518941-1|CAD57735.1| 456|Tribolium castaneum homothorax protein.
Length = 456
Score = 21.8 bits (44), Expect = 5.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 550 QEMNKPPGDP 521
Q M++PPGDP
Sbjct: 429 QMMHRPPGDP 438
>DQ138189-1|ABA03053.1| 162|Tribolium castaneum bursicon protein.
Length = 162
Score = 21.4 bits (43), Expect = 6.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 591 STFSLFCPWGSPSSLSFI 644
++ SLFCP P FI
Sbjct: 98 ASVSLFCPKAKPGERKFI 115
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 1 MQIFVKTLTGKTIT 14
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 1 MQIFVKTLTGKTIT 14
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 77 MQIFVKTLTGKTIT 90
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 153 MQIFVKTLTGKTIT 166
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 229 MQIFVKTLTGKTIT 242
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 305 MQIFVKTLTGKTIT 318
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 381 MQIFVKTLTGKTIT 394
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 457 MQIFVKTLTGKTIT 470
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 533 MQIFVKTLTGKTIT 546
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 609 MQIFVKTLTGKTIT 622
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 1 MQIFVKTLTGKTIT 14
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 21.4 bits (43), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 309 MNKFADTLTGRTIT 350
M F TLTG+TIT
Sbjct: 49 MQIFVKTLTGKTIT 62
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,914
Number of Sequences: 336
Number of extensions: 2899
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -