Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0123
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   31   1.1  

>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +2

Query: 278  NHTRS*VTTENE*VRRHLDR*NYHSRSRTRRLSSNHARVDTMLTYAELP 424
            +H RS   +E+   RR+    N HS SR RR S NH      LT   LP
Sbjct: 980  DHRRSSTRSEHSVQRRYS---NEHSPSRKRRNSDNHGHKKHSLTGVSLP 1025


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,039
Number of Sequences: 59808
Number of extensions: 348009
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)