Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0123
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14000.2 68416.m01768 expressed protein                             28   6.1  
At3g14000.1 68416.m01767 expressed protein                             28   6.1  
At3g13080.4 68416.m01638 ABC transporter family protein almost i...    27   8.1  
At3g13080.3 68416.m01637 ABC transporter family protein almost i...    27   8.1  
At3g13080.2 68416.m01636 ABC transporter family protein almost i...    27   8.1  
At3g13080.1 68416.m01635 ABC transporter family protein almost i...    27   8.1  

>At3g14000.2 68416.m01768 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 452 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 580
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


>At3g14000.1 68416.m01767 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 452 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 580
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


>At3g13080.4 68416.m01638 ABC transporter family protein almost
            identical to MRP-like ABC transporter GI:2316016 from
            [Arabidopsis thaliana]; contains Pfam profile: PF00005
            ABC transporter
          Length = 1120

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 634  NEEGEPQGQKSENVE*CQRQSCIAQEECQEMNKPPGDPFWASRTVAILGIII 479
            +E+ E Q  K++ +E  + Q  I QEE +E      D +W   T+A  G ++
Sbjct: 899  DEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALV 950


>At3g13080.3 68416.m01637 ABC transporter family protein almost
            identical to MRP-like ABC transporter GI:2316016 from
            [Arabidopsis thaliana]; contains Pfam profile: PF00005
            ABC transporter
          Length = 1120

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 634  NEEGEPQGQKSENVE*CQRQSCIAQEECQEMNKPPGDPFWASRTVAILGIII 479
            +E+ E Q  K++ +E  + Q  I QEE +E      D +W   T+A  G ++
Sbjct: 899  DEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALV 950


>At3g13080.2 68416.m01636 ABC transporter family protein almost
            identical to MRP-like ABC transporter GI:2316016 from
            [Arabidopsis thaliana]; contains Pfam profile: PF00005
            ABC transporter
          Length = 1489

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 634  NEEGEPQGQKSENVE*CQRQSCIAQEECQEMNKPPGDPFWASRTVAILGIII 479
            +E+ E Q  K++ +E  + Q  I QEE +E      D +W   T+A  G ++
Sbjct: 899  DEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALV 950


>At3g13080.1 68416.m01635 ABC transporter family protein almost
            identical to MRP-like ABC transporter GI:2316016 from
            [Arabidopsis thaliana]; contains Pfam profile: PF00005
            ABC transporter
          Length = 1514

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 634  NEEGEPQGQKSENVE*CQRQSCIAQEECQEMNKPPGDPFWASRTVAILGIII 479
            +E+ E Q  K++ +E  + Q  I QEE +E      D +W   T+A  G ++
Sbjct: 899  DEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALV 950


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,502,037
Number of Sequences: 28952
Number of extensions: 231839
Number of successful extensions: 495
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)