Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0122
         (321 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q094K8 Cluster: ATP synthase delta chain; n=2; Cystobac...    37   0.100
UniRef50_A0DU33 Cluster: Chromosome undetermined scaffold_64, wh...    35   0.40 
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    33   0.93 
UniRef50_UPI000023D930 Cluster: hypothetical protein FG09583.1; ...    32   2.1  
UniRef50_Q47TN6 Cluster: Putative integral membrane protein; n=1...    31   6.5  
UniRef50_Q05FF8 Cluster: Putative uncharacterized protein; n=1; ...    31   6.5  
UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ...    30   8.6  

>UniRef50_Q094K8 Cluster: ATP synthase delta chain; n=2;
           Cystobacterineae|Rep: ATP synthase delta chain -
           Stigmatella aurantiaca DW4/3-1
          Length = 194

 Score = 36.7 bits (81), Expect = 0.100
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 162 VKIFTNFSPVLINLICYHLSISLIFYLPDIGRVIRQRRDSRGGPV 296
           +++  N  PVL N +   +  + + YLPDI RV R   D+R G V
Sbjct: 79  IQLAGNLEPVLANTLRLLVERNRLIYLPDISRVFRDMADTRAGRV 123


>UniRef50_A0DU33 Cluster: Chromosome undetermined scaffold_64, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_64, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 3036

 Score = 34.7 bits (76), Expect = 0.40
 Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = +3

Query: 135  FYFLQ*HYTVKIFTNFSPVLINLICY--HLSISLIFYLPDIGRVIRQ 269
            +YFL+  Y +KIFTN+  ++ +L  +  +L +S  ++L  +G  I++
Sbjct: 2610 YYFLESPYLIKIFTNYLQIISSLTSFKLNLPVSYFYFLNGVGSPIQR 2656


>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.5 bits (73), Expect = 0.93
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +1

Query: 280 RGGARYPIRPIVSR 321
           RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273


>UniRef50_UPI000023D930 Cluster: hypothetical protein FG09583.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG09583.1 - Gibberella zeae PH-1
          Length = 705

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 114 SCKCISLFYFLQ*HYTVKIFTNFSPVLINLICYHLSISL 230
           SC  +   + LQ   T KI T+F+PV++  + Y+LSIS+
Sbjct: 235 SCAILVALFGLQFFGTSKIGTSFAPVVVVWLLYNLSISI 273


>UniRef50_Q47TN6 Cluster: Putative integral membrane protein; n=1;
           Thermobifida fusca YX|Rep: Putative integral membrane
           protein - Thermobifida fusca (strain YX)
          Length = 250

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +3

Query: 165 KIFTNFSPVLINLICYHLSISLIFYLPDIGRVIRQRRDSR--GGPV 296
           ++FT+ +PVLI   C     +LI + P I   +++RR +R  GGP+
Sbjct: 98  RVFTSIAPVLILFAC-----ALIIFQPQISARLQERRAARPHGGPL 138


>UniRef50_Q05FF8 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 337

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 49  LTNTNILFLVNMNYLLTFPNLKVVNALAYFISCNNIIL 162
           +T  N LF++++  +LTF N    N + YFI+ N +IL
Sbjct: 51  ITEINSLFIIDLKKILTFFNFN--NFVNYFINKNKLIL 86


>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
           uncultured bacterium|Rep: Non-ribosomal peptide
           synthetase - uncultured bacterium
          Length = 338

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 319 DSL*GELGTGPPLE 278
           DSL GELGTGPPLE
Sbjct: 279 DSLYGELGTGPPLE 292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,791,192
Number of Sequences: 1657284
Number of extensions: 4103615
Number of successful extensions: 8613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8613
length of database: 575,637,011
effective HSP length: 83
effective length of database: 438,082,439
effective search space used: 10075896097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)