Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0122
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   2.1  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   2.8  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    24   6.6  

>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 162 VKIFTNFSPVLINLICYHLSISLIFYLP 245
           +K+F   S V   L+C+HL  + +F  P
Sbjct: 31  IKVFGRSSIVTFFLLCFHLVPNALFLFP 58


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 177 NFSPVLINLICYHLSISLIFYLPDIGRVIRQ 269
           NF  V+ +   Y+ S   +FYLPD   ++++
Sbjct: 161 NFKQVIYSPTVYNGSFKRLFYLPDNNDLLKE 191


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 8   WQYKYVFTHHYIVY 49
           W + +VFTH Y VY
Sbjct: 238 WVFIFVFTHSYQVY 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,192,433
Number of Sequences: 5004
Number of extensions: 18524
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)