Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0122
         (321 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0488 - 9844247-9844717                                           27   3.3  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    26   7.6  
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337           26   7.6  
02_01_0410 + 2996779-2997888                                           26   7.6  

>09_02_0488 - 9844247-9844717
          Length = 156

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 123 CISLFYFLQ*HYTVKIFTNFSPVLINLICYHLSISLIFYLPDIGRVIRQ 269
           CI +   +   +  K  T F P+ ++L     S  LIF LP I ++ R+
Sbjct: 106 CIRIGLKVALQFNSKTLTLFYPIFVSLFYNFWSFVLIFGLPAIWKIHRR 154


>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
            18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 103  PNLKVVNALAYFISCNNIIL*KYLQIF 183
            P+L+V   LA F+SC+ I+  +++QI+
Sbjct: 1220 PDLRVTRTLASFLSCSEIL--QHIQIW 1244


>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
          Length = 386

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 40  YCLLTNTNILFLVNMNYLLTFPNLKVVNALAYFISCNNIIL 162
           YCL  + ++L ++N   ++ FP    + AL YF S   ++L
Sbjct: 63  YCL--SASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLL 101


>02_01_0410 + 2996779-2997888
          Length = 369

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 40  YCLLTNTNILFLVNMNYLLTFPNLKVVNALAYFISCNNIIL 162
           YCL  + ++L ++N   ++ FP    + AL YF S   ++L
Sbjct: 46  YCL--SASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLL 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,522,390
Number of Sequences: 37544
Number of extensions: 105745
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)