Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0122
         (321 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56370.1 68416.m06269 leucine-rich repeat transmembrane prote...    28   1.2  
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr...    27   2.1  
At1g76340.1 68414.m08869 integral membrane family protein contai...    26   4.9  

>At3g56370.1 68416.m06269 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           kinase - Malus domestica, EMBL:AF053127
          Length = 964

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 49  LTNTNILFLVNMNYLLTFPNLKVVN 123
           L+N N+  ++N N LL+  NLKVV+
Sbjct: 100 LSNNNLTGIINPNMLLSLVNLKVVD 124


>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 953

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 49  LTNTNILFLVNMNYLLTFPNLKVVNALAYFISCNNII 159
           LTN N L+L N  +  T PNL  + +L      NN +
Sbjct: 265 LTNLNELYLANNRFTGTLPNLTSLTSLYTLDVSNNTL 301


>At1g76340.1 68414.m08869 integral membrane family protein contains
           Pfam profile  PF00892: Integral membrane protein;
           similar to GDP-mannose transporter (SP:Q941R4)
           [Arabidopsis thaliana] and to LPG2 protein (GI:9998817)
           [Leishmania mexicana]
          Length = 372

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 40  YCLLTNTNILFLVNMNYLLTFPNLKVVNALAYFISCNNIIL 162
           YCL  + ++L ++N   ++ FP    + A+ YF S   ++L
Sbjct: 42  YCL--SASLLSIINKWAIMKFPYPGALTAMQYFTSAAGVLL 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,082,852
Number of Sequences: 28952
Number of extensions: 90823
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)