Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0121
         (566 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   1.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.3  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   7.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.3  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 255 KNYNNNCELLD 287
           KNYN+ CEL+D
Sbjct: 224 KNYNSICELVD 234


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 560 NSSIPFSSISGGLN 519
           +SS PFSSI GG++
Sbjct: 83  SSSGPFSSIGGGIS 96


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 255 LCGTKRQFFIQGVEKHTPRGLFTKHSVL 172
           + G     F  G+E    R  +T+H +L
Sbjct: 219 VAGASNGTFAPGMEPKRQRTAYTRHQIL 246


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 255 LCGTKRQFFIQGVEKHTPRGLFTKHSVL 172
           + G     F  G+E    R  +T+H +L
Sbjct: 219 VAGASNGTFAPGMEPKRQRTAYTRHQIL 246


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 462 LLPLFEWSQLNCSSI 418
           L+PLF W ++  S++
Sbjct: 15  LIPLFRWPKIGLSAL 29


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 255 LCGTKRQFFIQGVEKHTPRGLFTKHSVL 172
           + G     F  G+E    R  +T+H +L
Sbjct: 219 VAGASNGTFAPGMEPKRQRTAYTRHQIL 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,509
Number of Sequences: 336
Number of extensions: 2723
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)