Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0121
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.36 
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   3.4  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   3.4  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   4.4  
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos...    25   7.7  
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi...    25   7.7  
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa...    25   7.7  
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos...    25   7.7  
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos...    25   7.7  

>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 522 QHSLVSLSHMVSELKLNDKKLLP-LFEWSQLNCSSIKNTSNC*YKDKTHKNKFLCHVLLE 346
           Q    S+    S++  +   LLP L +W ++  S   N  +  +K  +     LCH+LL 
Sbjct: 157 QQLFASVDSSASDISFDAFSLLPHLLKWEEIVWSGFINYLDTEHKRDSLPTAVLCHLLLR 216

Query: 345 MS 340
           +S
Sbjct: 217 LS 218


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 214 KTYSSRFIY*TLSIVNDKGVIGVV*TI 134
           + +S  F+Y  LS++ DKG+  V+ T+
Sbjct: 610 EAFSGTFVYRNLSLIIDKGLANVLQTV 636


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 363 CHVLLEMSLKPNSLLPPDIK*TQSTSLIIHSCYCNFL 253
           C V    + KP++ LPPDI      S  +++C  N +
Sbjct: 887 CEVKSINAFKPDTTLPPDIISDSRFSSRVYACTANLI 923


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
 Frame = -3

Query: 534 QRWSQH-SLVSLSH-MVSEL-KLNDKKLLPLFEWSQL 433
           ++ ++H SL+S ++ ++S L K  D+KL+P+ EW QL
Sbjct: 655 EKVNEHESLLSRTNDILSTLRKERDEKLIPIHEWQQL 691


>SPAC212.01c |||S. pombe specific DUF999 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 560 NSSIPFSSISGGLNTHWSLSLIWSV 486
           NS  P   IS   N  W L +IWS+
Sbjct: 91  NSYYPDGRISTRSNFRWPLLIIWSI 115


>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
           10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 280

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 560 NSSIPFSSISGGLNTHWSLSLIWSV 486
           NS  P   IS   N  W L +IWS+
Sbjct: 91  NSYYPDGRISTRSNFRWPLLIIWSI 115


>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
           family 9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 560 NSSIPFSSISGGLNTHWSLSLIWSV 486
           NS  P   IS   N  W L +IWS+
Sbjct: 91  NSYYPDGRISTRSNFRWPLLIIWSI 115


>SPBC1348.01 |||S. pombe specific DUF999 protein family
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 560 NSSIPFSSISGGLNTHWSLSLIWSV 486
           NS  P   IS   N  W L +IWS+
Sbjct: 91  NSYYPDGRISTRSNFRWPLLIIWSI 115


>SPAC750.06c |||S. pombe specific DUF999 protein family
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 560 NSSIPFSSISGGLNTHWSLSLIWSV 486
           NS  P   IS   N  W L +IWS+
Sbjct: 91  NSYYPDGRISTRSNFRWPLLIIWSI 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,937
Number of Sequences: 5004
Number of extensions: 45733
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)