Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0121
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51629| Best HMM Match : NUMOD3 (HMM E-Value=9.8)                    28   6.1  
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)            28   6.1  

>SB_51629| Best HMM Match : NUMOD3 (HMM E-Value=9.8)
          Length = 337

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 126 IKGIVYTTPMTPLSFTILSV**INLEEYVFRPPE*RIVVLYRTKNYNNNCE 278
           +KGI  T PMTP  FT  +   +     +FR    R+      KN   N E
Sbjct: 161 MKGIDPTRPMTPKEFTYRTAELVKHSNEMFRTQRSRVKTKGLPKNSEENAE 211


>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
          Length = 679

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 204 PRGLFTKHSVL*TIKASSVLY 142
           PRGLFTKH  L   KA+  LY
Sbjct: 27  PRGLFTKHRSLKKFKATVELY 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,804,695
Number of Sequences: 59808
Number of extensions: 321628
Number of successful extensions: 1283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)