Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0121
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical
           protein ZC84.3 protein.
          Length = 826

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -3

Query: 525 SQHSLVSLSHM----VSELKLNDKKLLPLFEWSQLNCSSIKNTSNC 400
           S+ S  S +HM    +SE K   KKLLP+   + LN   IKN  NC
Sbjct: 278 SKLSAGSKAHMNISAISEKKEGIKKLLPIVADTSLNPIEIKNIGNC 323


>Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical
           protein W08G11.3b protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 60  SPVTWGRRNMFSSLPILLLP 1
           SPVTW +R  F  LP +++P
Sbjct: 419 SPVTWHQRKPFERLPAMVVP 438


>Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical
           protein W08G11.3a protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 60  SPVTWGRRNMFSSLPILLLP 1
           SPVTW +R  F  LP +++P
Sbjct: 418 SPVTWHQRKPFERLPAMVVP 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,169
Number of Sequences: 27780
Number of extensions: 252312
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)