Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0120
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    25   0.44 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    24   1.0  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    24   1.3  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   5.4  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    22   5.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 329 LHGPDLIARFIRCLGYGEPSGPGQSELSKASPHA 228
           LH   L+  +I CL    P  P   EL K  P A
Sbjct: 47  LHSKRLLLNYINCLLEKGPCSPEGRELKKILPDA 80


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 481 IPSSAQAGNTCGGGRLCKTRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVF 639
           I  S     TCG G +C+ R+     M G    + Q   I   + D  QQ+ F
Sbjct: 363 ISPSINDDGTCGNGYVCEHRWRQIFNMVGFR-NAVQETGIENWWSDGNQQIAF 414


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 481 IPSSAQAGNTCGGGRLCKTRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVF 639
           I  S     TCG G +C+ R+     M G    + Q   I   + D  QQ+ F
Sbjct: 362 ISPSINDDGTCGNGYVCEHRWRQIFNMVGFR-NAVQGTGIENWWSDGNQQIAF 413


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +1

Query: 481 IPSSAQAGNTCGGGRLCKTRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVF 639
           I  S     TCG G  C+ R+     M G    + Q   I   + D  QQ+ F
Sbjct: 363 ISPSINDDGTCGNGYGCEHRWRQIFNMVGFR-NAVQGTGIENWWSDGNQQIAF 414


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 110 NYITKQLLIISAAHYCTQVFLLIKRRHIRVIGRAC 6
           NYI KQLL       C  +   IK     +IG+ C
Sbjct: 30  NYIEKQLLCALDKAPCDALGNQIKGALPEIIGKNC 64


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 602 FKSFRICFSRSSLKYA 649
           F+S R+CF +SS K A
Sbjct: 148 FRSSRMCFFKSSKKPA 163


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 602 FKSFRICFSRSSLKYA 649
           F+S R+CF +SS K A
Sbjct: 148 FRSSRMCFFKSSKKPA 163


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 602 FKSFRICFSRSSLKYA 649
           F+S R+CF +SS K A
Sbjct: 148 FRSSRMCFFKSSKKPA 163


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 602 FKSFRICFSRSSLKYA 649
           F+S R+CF +SS K A
Sbjct: 148 FRSSRMCFFKSSKKPA 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,943
Number of Sequences: 336
Number of extensions: 3553
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)