Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0120
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   3.3  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   5.8  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   7.7  

>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 425 RLARRLLIIEPVERLIYQRYRRPHKPV 505
           RL +RL + EPV R+I +  R+  +PV
Sbjct: 223 RLCKRLSLKEPVYRIIAETGRKSREPV 249


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 517 GGRLCKTRYNTTAPMYGVSLTSGQPVTIVQKF 612
           GG LC  RY+ T P +   L     VT +++F
Sbjct: 128 GGELCSLRYDLTVP-FARWLAMNPKVTSIKRF 158


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 171 LLGIVYVLCHGRLRSTVKICMGRCLGKLGLSWSRRLAVS*TSY 299
           L  +V++L   ++   + +C G+   +LG+ W+  +    TSY
Sbjct: 7   LKSLVFILLASQIVFVLFLCYGKSSRELGVKWNSDIRSWMTSY 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,233
Number of Sequences: 5004
Number of extensions: 58182
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)