Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0120
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0623 - 19038777-19040561 31 0.85
07_03_1039 - 23454130-23454552,23454859-23455536 31 0.85
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 31 1.1
04_01_0620 - 8151065-8151791,8152246-8152418 30 1.5
01_06_0594 - 30473915-30474533,30474667-30474962 30 2.0
07_01_0254 - 1893079-1893181,1893455-1893492,1893586-1893706,189... 29 4.5
03_04_0009 + 16359273-16359563 29 4.5
12_01_0883 + 8507425-8507512,8507749-8507786,8507973-8508698,850... 28 6.0
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 28 6.0
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 28 6.0
02_02_0637 - 12491706-12492575,12492580-12492657 28 7.9
01_06_0148 - 27007330-27008124 28 7.9
>09_04_0623 - 19038777-19040561
Length = 594
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +2
Query: 242 PWKARIVLVQTARRILDIL*TELSNQDRGVSRPGRAEPRG-HWTLPS*DERSWTL--IAR 412
PWK R++ +++ + L + R ++ P RA P+G L +R T+
Sbjct: 426 PWKGRVITFDATQQLHKVCGATLVEKLRSLAAPVRAAPKGSSLNLQGVFDRILTVATYGG 485
Query: 413 TLKDRLARRLLIIEPVE 463
KD + RR+ ++ +E
Sbjct: 486 LAKDMMVRRVFVLSDME 502
>07_03_1039 - 23454130-23454552,23454859-23455536
Length = 366
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 521 PPPQVLPACADDGIVGKLTARPVLLLTVCALVDPSE-YEL*ASRSARLMMAGSSVRAALP 345
PP + A + G RP L L CA+V E + + A+ + ++ S V LP
Sbjct: 90 PPAALHEAMRYALLAGGKRVRPALCLAACAVVGGREAWAMPAAAAVEMVHTMSLVHDDLP 149
Query: 344 CRDD 333
C DD
Sbjct: 150 CMDD 153
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -1
Query: 471 INRSTGSIINSLRASRSFRVRAMSVQERSSHDGRVQCPRGSA--LPGRLTPRS*FDSSVY 298
+N++ G++I LRAS+ + + + +QE + H + PR L G LT R V
Sbjct: 214 LNKAKGNLILQLRASKFLKFQEVKLQELAEHVPKGHIPRSLTVHLRGELT-RKVAPGDVV 272
Query: 297 KMSRI 283
+MS I
Sbjct: 273 EMSGI 277
>04_01_0620 - 8151065-8151791,8152246-8152418
Length = 299
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 382 RRALLDAHSSYSEGSTSAQTVNNRTGRAVNLPTIPSSAQAGNTCGG 519
RR L+D +S+ +S +T + GR+++L T P + + GG
Sbjct: 163 RRGLVDVARVFSDDESSDETPTSPAGRSLDLSTAPILSLGADGAGG 208
>01_06_0594 - 30473915-30474533,30474667-30474962
Length = 304
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +1
Query: 199 MADCGPRLKYAWGDALESSDCPGPDGSPYPRHLINRAIKSGPWSQSSRQGRAARTLDPAI 378
M+ G R + G+ + ++DCPG SP P A +S + +S GR+ R+ +
Sbjct: 1 MSGGGGREQMKGGEDVAAADCPGSPVSPSPA----AAQRSAAGAAASPSGRSRRSAQKRV 56
Query: 379 MRRALLDAHSSYSEGSTSAQT 441
+ L D +G T
Sbjct: 57 VTVPLADVTGPRPKGVGEGNT 77
>07_01_0254 -
1893079-1893181,1893455-1893492,1893586-1893706,
1893800-1893869,1894231-1894401,1894485-1894659,
1894746-1894933,1895023-1895166,1895316-1895379,
1895464-1895556,1895649-1895734,1896434-1896574,
1896658-1896804,1896970-1897057,1898080-1898235,
1898428-1898577
Length = 644
Score = 28.7 bits (61), Expect = 4.5
Identities = 28/90 (31%), Positives = 38/90 (42%)
Frame = +1
Query: 316 SGPWSQSSRQGRAARTLDPAIMRRALLDAHSSYSEGSTSAQTVNNRTGRAVNLPTIPSSA 495
S P S ++R A + P+I R L+ A SSY+ S V G A I S
Sbjct: 22 SAPVSAAARLFSTASVV-PSIPRPQLIRATSSYTVVDHSYDAVVVGAGGAGLRAAIGLSE 80
Query: 496 QAGNTCGGGRLCKTRYNTTAPMYGVSLTSG 585
NT +L TR +T A G++ G
Sbjct: 81 HGFNTACITKLFPTRSHTVAAQGGINAALG 110
>03_04_0009 + 16359273-16359563
Length = 96
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 289 RHLINRAIKSGPWSQSSRQGRAARTLDP----AIMRRALLDAHSSY 414
RHL+ ++SG W A TLDP ++ AL D H+ Y
Sbjct: 37 RHLVAALLRSGEWRVRITDLAPAITLDPVEEKGLLGEALRDGHAVY 82
>12_01_0883 +
8507425-8507512,8507749-8507786,8507973-8508698,
8508794-8508913
Length = 323
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 382 RRALLDAHSSYSEGSTSAQTVNNRTGRAVNLPTIPSSAQAGNTCGGGRLCKT 537
++ L+D +S+ +S +T + GR++ L T P + GG T
Sbjct: 132 KKGLVDVACVFSDDESSDETPTSPAGRSLGLSTAPGATTDTGEAGGSAAAGT 183
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 645 YFKDDLLKQIRKLLNYGDRLARSQRHPVHRSSCVV 541
Y +DDL KQ+ + LN G + HPV ++ +V
Sbjct: 347 YTQDDLPKQVVRNLNQGSNVMSLDFHPVQQTILLV 381
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -2
Query: 164 TAKFIEHIFLIILIYFQRNYITKQLLIISAAHYCTQ 57
TAKF+++ L+ L F RN+I ++ ++++ + Q
Sbjct: 739 TAKFLKNAILLFLDVFPRNHILEEAVLVTPQIHTAQ 774
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 457 GRAVNLPTIPSSAQAGNTCGGGRLCKTR---YNTTAPMYGVSLTSGQPVTIVQ 606
G AV+L + SA + + GG + K YNT +YG+SL + ++VQ
Sbjct: 250 GEAVHLFGLMRSAASDGSDRGGSIIKPNVVTYNTMIAIYGMSLGDEKAGSLVQ 302
>01_06_0148 - 27007330-27008124
Length = 264
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 616 PETFELW*PVGQKSKTPRTSEQLCCNGSCRD--GHRRRCYRLVRTTVS 479
PE++ LW P GQ S TP + + +GS RR RLVR + S
Sbjct: 131 PESYCLWAPGGQPSTTPASPRRCRKSGSTGSVLRWRRISERLVRRSHS 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,497,847
Number of Sequences: 37544
Number of extensions: 427697
Number of successful extensions: 1491
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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