Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0120
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50829| Best HMM Match : Phage_integrase (HMM E-Value=0.011)         30   1.5  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      29   2.7  
SB_112| Best HMM Match : DUF1059 (HMM E-Value=7.3)                     29   2.7  
SB_5499| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_5027| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_50829| Best HMM Match : Phage_integrase (HMM E-Value=0.011)
          Length = 337

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 332 SRPGRAEPRGHWTLPS*DERSWTLIARTLKDRLARRLLIIEPVERLIYQRYRRPHKPVTP 511
           SRPGR +P    TLPS        +   L++ ++R   +    +  ++  Y RPHKPV  
Sbjct: 222 SRPGRPQPV--LTLPSFTVDKRLCVVLHLEEYISRTNPLRTQGDTQLFISYTRPHKPVAR 279

Query: 512 AAVA 523
           + ++
Sbjct: 280 STLS 283


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 300  KPSYQIRTVESVVPAGQSRADTGPCHHETS 389
            +P     + +SV PA    ADTGPCH + S
Sbjct: 1565 EPKVAKSSSDSVDPAKDDDADTGPCHTKAS 1594


>SB_112| Best HMM Match : DUF1059 (HMM E-Value=7.3)
          Length = 291

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 305 ELSNQDRGVSRPGRAEPRGHWTLPS*DERSWTLI 406
           EL  +D    R  RA PR  + LPS D + W L+
Sbjct: 146 ELFYEDMNRGRRTRASPRPRYLLPSVDSKPWYLL 179


>SB_5499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 455 PVERLIYQRYRRPHKPVTPAAVAVSARPVTTQLLRCTG 568
           P  R+ +Q   R  + +TP  V   ARP    L RCTG
Sbjct: 65  PTPRVTWQHNGRNLQYMTPRLVIRDARPQDAGLYRCTG 102


>SB_5027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 307 LGL*DV*DTASRLDQDNPSFPRHLPMHILTV----DRNLP*HNT*TMPSK*T 164
           LGL D  DT S + ++NPS   + PM ++ +    +R+   H T   PSK T
Sbjct: 36  LGLHDERDTISHVTKNNPSKRTYYPMRVILLGLHDERDTISHVTKNSPSKRT 87


>SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 570 HPVHRSSCVVTGLAETATAAGVTGL 496
           H     SC VTG A TAT +G+  L
Sbjct: 256 HMTLTQSCTVTGRARTATGSGILAL 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,576,724
Number of Sequences: 59808
Number of extensions: 498488
Number of successful extensions: 1486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)