Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0120
         (684 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003760-1|AAO41439.1|  249|Drosophila melanogaster RE41427p pro...   148   6e-36
AE014296-2237|AAN11847.1|  249|Drosophila melanogaster CG17672-P...   148   6e-36
AY069333-1|AAL39478.1|   91|Drosophila melanogaster LD04944p pro...    77   2e-14
BT009925-1|AAQ21582.1|  516|Drosophila melanogaster LD20463p pro...    30   2.6  
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       30   2.6  
AE013599-1619|AAO41397.1|  516|Drosophila melanogaster CG13320-P...    30   2.6  
AE013599-1618|AAF58438.1|  516|Drosophila melanogaster CG13320-P...    30   2.6  
AE013599-3695|AAF47069.1| 1201|Drosophila melanogaster CG5549-PA...    29   5.9  

>BT003760-1|AAO41439.1|  249|Drosophila melanogaster RE41427p
           protein.
          Length = 249

 Score =  148 bits (359), Expect = 6e-36
 Identities = 89/159 (55%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
 Frame = +1

Query: 211 GPRLKYAWGDAL-ESSDCPGPDGSPYPRHLINRAIKSGPWSQSSRQGRAAR---TLDPAI 378
           G  LKY  GDAL +S DC GP+ +PYP   + R   +  W+ +SR+GR ++   TLDPAI
Sbjct: 48  GRGLKYLSGDALTDSLDCLGPNNAPYPSAAVARTFSN--WNGNSRRGRQSKLPSTLDPAI 105

Query: 379 MRRALLDAHSSYSEGSTSAQTVNNRTGRAVNLPTIPSSAQAGNTCGGGRLCKTRYNTTAP 558
              ALL A   Y E +  A   ++R GR++   T    AQ   +    RLCKTRYNTTAP
Sbjct: 106 TTSALLRA---YDEVNNEA-VGSSRYGRSLKNAT---PAQQCKSETPARLCKTRYNTTAP 158

Query: 559 MYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSEWSVIR 675
           MYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSE  V+R
Sbjct: 159 MYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVR 197


>AE014296-2237|AAN11847.1|  249|Drosophila melanogaster CG17672-PA
           protein.
          Length = 249

 Score =  148 bits (359), Expect = 6e-36
 Identities = 89/159 (55%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
 Frame = +1

Query: 211 GPRLKYAWGDAL-ESSDCPGPDGSPYPRHLINRAIKSGPWSQSSRQGRAAR---TLDPAI 378
           G  LKY  GDAL +S DC GP+ +PYP   + R   +  W+ +SR+GR ++   TLDPAI
Sbjct: 48  GRGLKYLSGDALTDSLDCLGPNNAPYPSAAVARTFSN--WNGNSRRGRQSKLPSTLDPAI 105

Query: 379 MRRALLDAHSSYSEGSTSAQTVNNRTGRAVNLPTIPSSAQAGNTCGGGRLCKTRYNTTAP 558
              ALL A   Y E +  A   ++R GR++   T    AQ   +    RLCKTRYNTTAP
Sbjct: 106 TTSALLRA---YDEVNNEA-VGSSRYGRSLKNAT---PAQQCKSETPARLCKTRYNTTAP 158

Query: 559 MYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSEWSVIR 675
           MYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSE  V+R
Sbjct: 159 MYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVR 197


>AY069333-1|AAL39478.1|   91|Drosophila melanogaster LD04944p
           protein.
          Length = 91

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = +1

Query: 559 MYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSEWSVIR 675
           MYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSE  V+R
Sbjct: 1   MYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVR 39


>BT009925-1|AAQ21582.1|  516|Drosophila melanogaster LD20463p
           protein.
          Length = 516

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
 Frame = +1

Query: 247 ESSDCPGPDGSPYPRHLINRAIKSGPWSQSSRQGRAARTLDPAIMRRALLDAHSSYSEGS 426
           E SD   P GS    ++++  +K   WS      +  R   P      L+   SS S GS
Sbjct: 165 EYSDLSAPSGSSKTGNMLS-TLKQKIWSSQGNLNKTPRDTPPPTKFSDLVGNGSSSSGGS 223

Query: 427 TSAQ---TVNNRTG--RAVNLPTIPSSAQAGNTCGG 519
           T A    TV  R    +  +  T P S  + +T GG
Sbjct: 224 TIASRAGTVQKRPSQLQKQHSSTCPHSKISSDTDGG 259


>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 552 SCVVTGLAETATAAGVTGLCGRRYRW*INRSTGSIINSLRASRSFRVRAMSVQERSSHDG 373
           S + T         G+  +  R  RW I     ++I +   +RSFRVR  +V   +SH  
Sbjct: 579 SILATDFERAFDRVGIHAVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTS-NSHIL 637

Query: 372 RVQCPRGSAL 343
               P+GS L
Sbjct: 638 HNGIPQGSPL 647


>AE013599-1619|AAO41397.1|  516|Drosophila melanogaster CG13320-PB,
           isoform B protein.
          Length = 516

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
 Frame = +1

Query: 247 ESSDCPGPDGSPYPRHLINRAIKSGPWSQSSRQGRAARTLDPAIMRRALLDAHSSYSEGS 426
           E SD   P GS    ++++  +K   WS      +  R   P      L+   SS S GS
Sbjct: 165 EYSDLSAPSGSSKTGNMLS-TLKQKIWSSQGNLNKTPRDTPPPTKFSDLVGNGSSSSGGS 223

Query: 427 TSAQ---TVNNRTG--RAVNLPTIPSSAQAGNTCGG 519
           T A    TV  R    +  +  T P S  + +T GG
Sbjct: 224 TIASRAGTVQKRPSQLQKQHSSTCPHSKISSDTDGG 259


>AE013599-1618|AAF58438.1|  516|Drosophila melanogaster CG13320-PA,
           isoform A protein.
          Length = 516

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
 Frame = +1

Query: 247 ESSDCPGPDGSPYPRHLINRAIKSGPWSQSSRQGRAARTLDPAIMRRALLDAHSSYSEGS 426
           E SD   P GS    ++++  +K   WS      +  R   P      L+   SS S GS
Sbjct: 165 EYSDLSAPSGSSKTGNMLS-TLKQKIWSSQGNLNKTPRDTPPPTKFSDLVGNGSSSSGGS 223

Query: 427 TSAQ---TVNNRTG--RAVNLPTIPSSAQAGNTCGG 519
           T A    TV  R    +  +  T P S  + +T GG
Sbjct: 224 TIASRAGTVQKRPSQLQKQHSSTCPHSKISSDTDGG 259


>AE013599-3695|AAF47069.1| 1201|Drosophila melanogaster CG5549-PA
            protein.
          Length = 1201

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 346  GRAARTLDPAIMRRALLDAHSSYSEGSTSAQTVNNRTGRAVNLPTIPSSAQAG 504
            G A  T  PA+ ++A   A +  S+G+T+  T    T  A+N  TI  SA +G
Sbjct: 1034 GGATSTAQPAVNQKATAAAAAQKSQGATATAT---PTKTALNQKTIVPSAGSG 1083


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,943,536
Number of Sequences: 53049
Number of extensions: 694085
Number of successful extensions: 2155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)