Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0120
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.3  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 210 AICHDITRKQCQVNKHR*IY 151
           A+CH + R    +N H+ IY
Sbjct: 405 ALCHKVFRTLNSLNNHKSIY 424



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 360 PRGSALPGRLTPRS*FDSSVYKMSRIRR 277
           PRG +LP  +TP       + + ++IRR
Sbjct: 151 PRGGSLPTPVTPTPTTVQQLLRRAQIRR 178


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 223 KYAWGDALESSDCPGPDGSPYPRHLINRAIKSGPWSQSSRQ 345
           KY  G+   SSD    + S        R +K  P +QS+++
Sbjct: 302 KYGSGECYFSSDLSESETSSDEEEADTRPLKKEPITQSNKR 342


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +2

Query: 164 CLFTWHCLRVMSWQIAVHG*NMHGEMPW 247
           C    + + +++W I     +M  E+PW
Sbjct: 71  CWMNVYYIVILAWAIFYFFMSMRSELPW 98


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 343 QGRAARTLDPAIMRR 387
           +G  ARTL+P IM R
Sbjct: 632 EGLRARTLEPPIMPR 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,094
Number of Sequences: 438
Number of extensions: 4296
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)