Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0119
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 28 1.6
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 3.8
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 5.0
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 26 6.6
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 26 6.6
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 26 6.6
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 6.6
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 6.6
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 8.7
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 8.7
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = +3
Query: 531 SMGDGNGRLHTTAHRKCSQ*SPTTQESDPKYLNHQYPHFRF-HLTPTWPLQPKIPFHHHK 707
S N R T+ SP T E Y P + H P +P+IPF H
Sbjct: 253 SSSSNNERFKDTSEESIIFTSPNTPEHPSVYQTDITPEIKLEHSDNNSPSKPEIPFRHPT 312
Query: 708 KLP 716
P
Sbjct: 313 SKP 315
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 3.8
Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 6/144 (4%)
Frame = +1
Query: 283 TSSQQPPGFHLPAIMHVERNWFVPSNTLKGTPITRVYSDKTGTEAVTYGLEA--DGASVP 456
++S QPP PA +R N V+ + V L+ D ++
Sbjct: 66 STSLQPPSSQPPAPPTHQREASPVKNIEHSESFPSVFGTSNNHQIVPLTLKDGNDFGALY 125
Query: 457 FEINPQTGVVTVNDTLIDKENRSYSLWVTAMDGSIPQRTGSVRNNHRQLRSPTQNTSTTN 636
+N V++ + N W T+ Q VR + SP ++ N
Sbjct: 126 ASLNTTPHFPQVSNHAPNNSNSPSLTWHTSSGDDSNQNPFFVRRQSQSSTSPVSDSVDEN 185
Query: 637 ILTSVSTLR---QRGLY-NQRYPF 696
+L++VS++ + L+ +Q YP+
Sbjct: 186 LLSAVSSVTESVETNLHLDQNYPY 209
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 607 SPTQNTSTTNILTSVSTLRQRGLYNQRYPFTTIRNY 714
S + N +TTNI TS ++L +G+ + ++ R+Y
Sbjct: 630 SISPNKATTNIFTSQASLSSQGVARETSSASSYRSY 665
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 371 PFKVLEGTNQFLSTCIIAGRWKPGG 297
P+K+L+ T + +S + G KPGG
Sbjct: 169 PYKILDLTAECISLMLTLGNVKPGG 193
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 516 LLINQSVINSNDSCLRVDLERDRCAVS 436
LLI++S N + +C R+ ++C+VS
Sbjct: 241 LLISRSCFNDDQACERIRKNLEQCSVS 267
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 352 PSNTLKGTPITRVYSDKTGTEAVTYGLEADGASVPFEINPQTGVVTVNDTLIDKEN 519
P + +G+PI +KT E ++Y L+ G VP + + + G T+ D + N
Sbjct: 209 PEFSAEGSPILDKRDEKTRLELLSYILKLLGLKVPKDTS-KCGQPTLTDQYLFPNN 263
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +1
Query: 601 LRSPTQNTSTTNILTSVSTLRQRGLYNQRYPFTTIRNYQIGEQPPPEF 744
+R PT++++ SVS + NQ ++I ++P P F
Sbjct: 62 IRQPTESSTHFQSSHSVSNAHNQSPLNQSQSSANPVTFEIADEPSPSF 109
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 143 LSYTCTLHFLYTSTRFKSFILQSNYRPSHYNTS 45
L+ LH+LYT T + L S + P N S
Sbjct: 680 LAVAILLHYLYTDTLLSPWHLDSRFSPLKENLS 712
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 331 VERNWFVPSNTLKGTPITRVYSDK 402
+E++ F+P + LKGT +T + +K
Sbjct: 447 IEKSKFIPISGLKGTNLTSISQEK 470
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 283 TSSQQPPGFHLPAIMHVERNWFVPSNTLKGTPITRVYSDKTGTEAVTYGLEADGASVPFE 462
T ++ P F +P E + S LKG + Y+ T TEA E +S+P
Sbjct: 965 TILEEDPPF-VPKPFSPEDTVYFDSRGLKGFDFSEYYNQPTVTEAQKLEEERPASSIPQH 1023
Query: 463 IN 468
++
Sbjct: 1024 VS 1025
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,684
Number of Sequences: 5004
Number of extensions: 73181
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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