Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0119
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0580 + 9615646-9616647 31 0.98
09_06_0002 + 20121846-20123308,20123420-20123426 30 1.7
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438... 29 3.9
04_03_0293 - 14001443-14001956,14002070-14002644 29 3.9
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 28 6.9
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 28 6.9
12_02_0503 - 19756561-19757991,19758606-19759967 28 9.1
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 28 9.1
02_02_0637 - 12491706-12492575,12492580-12492657 28 9.1
>03_02_0580 + 9615646-9616647
Length = 333
Score = 31.1 bits (67), Expect = 0.98
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Frame = +1
Query: 193 QAKDTDSGGQTITVI-----MSMGVWLTVAGCLVLTSSQQPPGFHLPAIMHVERNWFVPS 357
++K +D GG V+ S V L + + S PP LPA+ E+ WF P
Sbjct: 117 RSKPSDGGGTAAAVVDGREEESTNVHLHLLVEDEIRMSSSPPA--LPAVDQKEKTWFPPG 174
Query: 358 --NTLKGTPITRVYSDKTGTEAVTYGLEA 438
N P Y+D+ G E++ LE+
Sbjct: 175 GYNEQCKPPARITYADRCGPESLEAFLES 203
>09_06_0002 + 20121846-20123308,20123420-20123426
Length = 489
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 305 PGGCCDDVRTRHPATVSHTPIDMITVIV*PPESVSLACVASFVRAAT 165
P GCC+D T P + S+ P +M IV +S+ + ++R +T
Sbjct: 315 PPGCCNDDITTRPLSDSYPP-EMYRSIVCVGDSIKFVTIEGYLRDST 360
>06_03_1298 +
29141578-29141623,29142129-29142250,29143818-29143874,
29143983-29144138,29144220-29144304,29144575-29144665,
29144807-29144971,29145064-29145186,29145334-29145409,
29145513-29145642,29145951-29147824,29148339-29148529,
29148697-29148860,29149164-29149275,29149276-29149294
Length = 1136
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 574 GSVRNNHRQLRSPTQNTSTTNILTSVSTLRQRGLYNQRYPFTTIRNYQIGEQPPPE 741
G+ N+ PT T + TSV + GL +Q +P + Q+ + PP+
Sbjct: 807 GTGSQNYVNNPPPTDYLETASSATSVWLSQNDGLLHQNFPMSNFNQPQMFKDAPPD 862
>04_03_0293 - 14001443-14001956,14002070-14002644
Length = 362
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 510 INQSVINSNDSCLRVDLERDRCAVSFQAVRDSLCAGLVAVHPGDGRTLQ 364
+N S+ N + CLRVD C +A DSL A L +H D L+
Sbjct: 100 LNMSMQNVRNCCLRVD-----CIGKIRAHYDSLVADLAGLHADDVANLR 143
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 547 MDGSIPQRTGSVRNNHRQLRSPTQNTSTT 633
MDGSIP + S R R+ + ++NT T
Sbjct: 1 MDGSIPPKPPSCRQPQRETHNNSENTGAT 29
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +3
Query: 231 CDHVYGSMAHGSGMSCS-----DIVTAASRLPPACDYA 329
C HV ++AH G CS D ++SR P CD A
Sbjct: 80 CQHVKKNIAHSPGQQCSPSERFDEWKSSSRRRPKCDVA 117
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 276 CSDIVTAASRLPPACD 323
C+++VT +SRLPPA D
Sbjct: 778 CANLVTTSSRLPPASD 793
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 169 AALTNEA--TQAKDTDSGGQTITVIMSMGVWLTVAGCLVL 282
A L+N + T + S G T+T + G W+ AG LVL
Sbjct: 387 AKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVL 426
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 529 SLWVTAMDGSIPQRTGSVRNNHRQLRSPTQNTSTTN 636
S W+ +GS P R+ + R++ RSP + TSTT+
Sbjct: 96 SSWICGTEGSPPTRSRTPRSSR---RSPARATSTTH 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,135,188
Number of Sequences: 37544
Number of extensions: 553816
Number of successful extensions: 1490
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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