Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0119
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   4.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 481 VVTVNDTLIDK--ENRSYSLWVTAMDGSIPQRTGSVRNNHRQLRSPT 615
           ++  ++  IDK  E R +  W+   DG +   TG    NHR+L +PT
Sbjct: 101 IILSSNVYIDKSTEYRFFKPWLG--DGLLIS-TGQKWRNHRKLIAPT 144


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 216 RSNDYCDHVYGSMAHGSGMSCSDIV 290
           + N+Y D+ + S ++GS  S SD++
Sbjct: 134 QENNYNDNYFYSKSNGSNSSNSDVL 158



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 213 RRSNDYCDHVYGSMAHGSGMSCSD 284
           R+++DY D+   SM +    SC+D
Sbjct: 171 RKNSDYLDNQEVSMENTENKSCTD 194


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -2

Query: 738 WGWLFSNLVVSYG--GERVSLVVKATLA 661
           WGWL  N   +YG  G+R     +A ++
Sbjct: 233 WGWLAFNSGSTYGVSGQRWQYAARAAIS 260


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 733 VVVLQFGSFLWW*KGIFGCKGHVGVRW 653
           VVV   GS L+   GIFG    + + W
Sbjct: 91  VVVTHDGSCLYVPPGIFGSTCKIDIAW 117


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 547 MDGSIPQRTGSVRNNHRQLRSPTQNTSTTNILTSVSTLRQRGLYNQ 684
           MDG +    G +RNN R L   +   S      + S +R   L+N+
Sbjct: 245 MDGILGLALGPIRNNDRILYFHSL-ASRVESWVNTSVIRNYTLFNE 289


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 531 SMGDGNGRLHTTAHRKCSQ-*SPTTQESDPKYLNHQYP 641
           +MG G+  +H T H   S   +P  Q S P   +  YP
Sbjct: 418 TMGHGHSHIHATPHHHHSHAATPHHQHSTP-LAHSSYP 454


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 658 LRQRGLYNQRYP-FTTIRNYQIGEQPPPEFL 747
           L+ + + N R+P FTT+    IGE  P E +
Sbjct: 311 LKAKNMEN-RFPLFTTVHRICIGETMPMELI 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,830
Number of Sequences: 438
Number of extensions: 6052
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)