Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0118
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical pr...    27   7.1  
DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.    27   7.1  
Z81146-5|CAB03522.3|  699|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical
           protein F59G1.4 protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 565 INNSKTYIYGRPYLWVNHKFYMP 497
           IN   +Y  GR Y  V+HK ++P
Sbjct: 136 INTMASYTSGRSYFTVHHKIFLP 158


>DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 565 INNSKTYIYGRPYLWVNHKFYMP 497
           IN   +Y  GR Y  V+HK ++P
Sbjct: 136 INTMASYTSGRSYFTVHHKIFLP 158


>Z81146-5|CAB03522.3|  699|Caenorhabditis elegans Hypothetical
           protein K10D11.3 protein.
          Length = 699

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 535 RPYLWVNHKFYMPLKLK*STNRLKFGFLV 449
           +PY++V +KF + L +  + N  KFGF+V
Sbjct: 310 QPYVFVGNKFTINLIVGANGNSTKFGFVV 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,943,502
Number of Sequences: 27780
Number of extensions: 185248
Number of successful extensions: 245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)