Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0116
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.40 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   2.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.9  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   4.9  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 420 CPPIYRPRCRLS 455
           CPPIY P C+ S
Sbjct: 33  CPPIYEPSCQYS 44


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 280 LYIMLIGKSLSWDRSRWRYLIRN 212
           L  + I KS  WD  +WR L  N
Sbjct: 93  LTTVTIFKSAFWDVDKWRTLFTN 115


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 327 LSLIFHRIQSMQGLHRHP 380
           +SL  H+I SM   H HP
Sbjct: 349 MSLTRHQISSMGHSHAHP 366


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 182 SPVGTPQPPAIPNQVSPPGPIPTQTFTNQHYV 277
           SPVG   PP +P   +    +P QT     Y+
Sbjct: 119 SPVGVALPPTLP-AAAAAALLPPQTAAMAAYL 149


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 327 LSLIFHRIQSMQGLHRHP 380
           +SL  H+I SM   H HP
Sbjct: 349 MSLTRHQISSMGHSHAHP 366


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 593 VFFIGHGRNRRKYLLAER 540
           V ++  GRN RKY + ER
Sbjct: 193 VGYVVEGRNYRKYRVEER 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,502
Number of Sequences: 336
Number of extensions: 2644
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)