Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0116
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 29 0.42
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.3
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 1.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 3.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.2
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 5.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 6.9
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 25 6.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.1
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 9.1
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 29.5 bits (63), Expect = 0.42
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 216 LIKYRHLDLSQLRLLPINIMYNYPGVESRNLAA--CPCRLSLIFHRIQSMQGLHRHPCPC 389
LI H+D ++ L +N YN G+ L A CP +F +QS Q R C
Sbjct: 243 LINVMHVDEQYVKRLKLNQPYNIMGITVYVLDANHCPGSAMFVFETLQSNQ--TRRVLHC 300
Query: 390 RPYLRTRTVLCPPIYRPR 443
+ ++ + P+ R +
Sbjct: 301 GDFRASKDHVMHPVLREK 318
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 180 TVR*AHHNRPRFLIKYRHLDLSQLRLLPINI 272
T+ HHN F+ ++R +DL L LL I +
Sbjct: 263 TLNLPHHNHVSFMTRFRKIDLKGLILLIIGV 293
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 406 PARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGT 525
P S++ +T+PA +PST T+ AT++ + S +
Sbjct: 233 PTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSAS 272
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 182 SPVGTP--QPPAIPNQVSPPGPIPTQTFTNQHYVQLP 286
SP+GT PAI QV+P P P T +H+ P
Sbjct: 711 SPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPP 747
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 170 SEIDSPVGTPQPPAIPNQVSPPGPIPTQTFT 262
+ + S V P PPA P+Q PP P PT T
Sbjct: 264 NNLGSQVNIPPPPATPSQ--PPRP-PTNAST 291
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 373 GTRAHAARTYAPARS-SARQSTAPAAACHARRPSTSA 480
GT A ++ A S + + TAPAA+ A P+TSA
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAPAASASAPAPTTSA 963
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 561 SPVSPVTDKEDDSR 602
SPVSPV D +DSR
Sbjct: 1071 SPVSPVVDSNEDSR 1084
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 235 WTYPNSDFYQS 267
WTYP S FYQ+
Sbjct: 362 WTYPGSQFYQN 372
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 206 PAIPNQVSPPGPIPT 250
P +P ++ PPGP PT
Sbjct: 762 PEMPTRMPPPGPSPT 776
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 141 ALKTFSFYKSLKL-TVR*AHHNRPRFLIKYRHLDLSQLRLLP 263
AL+ + Y LKL T + + FL+K+ +D LRLLP
Sbjct: 35 ALQAYKIYDLLKLETSSISDVPKSGFLVKWIIIDAIYLRLLP 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,133
Number of Sequences: 5004
Number of extensions: 39265
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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