Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0116
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)                36   0.036
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.036
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    31   0.78 
SB_36777| Best HMM Match : VWA (HMM E-Value=0)                         31   1.0  
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)                  30   1.8  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_19226| Best HMM Match : I-set (HMM E-Value=0)                       29   3.1  
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)                  29   3.1  
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)                   29   4.1  
SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)                29   4.1  
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             28   5.5  
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                 28   5.5  
SB_3839| Best HMM Match : Lep_receptor_Ig (HMM E-Value=6)              28   7.2  
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)              28   7.2  
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)                       28   7.2  
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)                 27   9.6  
SB_6911| Best HMM Match : Ank (HMM E-Value=0)                          27   9.6  
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
          Length = 623

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 167 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGGR 295
           +S ++S    P PP IP + SPPG    PIPTQ   N HY  LPG +
Sbjct: 358 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSK 400


>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 167 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGGR 295
           +S ++S    P PP IP + SPPG    PIPTQ   N HY  LPG +
Sbjct: 325 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSK 367


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 185 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPG 289
           P+G    P +P    PPGP P  TF + H+ Q  G
Sbjct: 898 PMGPMGDPGLPGPPGPPGP-PVSTFYHHHHHQHHG 931


>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1303

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 89   AYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIP 247
            +YF  Q    +   + + +Q   + ++   +  V TP P  +PN V  P P P
Sbjct: 1221 SYFRGQISCMQVYDKPLNAQQIVYARDICDNLQVSTPSPSLVPNPVPQPAPAP 1273


>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
          Length = 918

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 390 RPYLRTRTVLCPPIYRPRCRLSRTPALHLSPYITQCN 500
           +PYLRT TV  P +   + +L RT +  L P    C+
Sbjct: 324 KPYLRTFTVADPKVQLYQAKLHRTASAPLGPQRISCS 360


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 370  TGTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRS 507
            +G  +  ++T  P   + +QST P A  H RR ST  R+  +++ S
Sbjct: 1093 SGPVSLTSKTPGPVSLTTKQSTKPEAKKHKRRSSTPERSDSDSSVS 1138


>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1500

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 387 CRPYLRTRTVLCPPIYRPRCRLSRTPALHLSPYITQCNP--LSSRLWYTPLLRP 542
           C PY  +  +L  P+  P       P  H  PY   C+P   S+R+   PL+ P
Sbjct: 181 CSPYYTSTRMLTVPLITPLPVFYLFPLSHQYPY-ANCSPYYTSTRMLTVPLITP 233


>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 285

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 390 RPYLRTRTVLCPPIYRPRCRLSRTP--ALHLSPYITQCNPLSSRLWYTPLLRPFCKKILS 563
           RP+++     C   +RP C+   +P  ALH    +    P    +++    RP CK   S
Sbjct: 69  RPHMQDVYFTC---HRPTCKTCTSPVTALHARRVLHLSPPYMQDVYFI-CHRPTCKTCTS 124

Query: 564 PVSPVTDK 587
           PV+ +T K
Sbjct: 125 PVTALTCK 132


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +2

Query: 74  QEVEHAYFAQQYPQQRPITEVIGSQ-NFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPT 250
           ++V+H    QQ    +P      SQ NF F Q + +  P     P  +  Q   P P PT
Sbjct: 117 EQVKHVQHLQQQIALQPQLNGYPSQINFSFPQTAAVTLPQQIQHPTQLSQQPQQPDPPPT 176


>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
          Length = 454

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +3

Query: 342 HRIQSMQGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRTPALHLSPYITQCNPLSSRLW 521
           H  +SM  +   P PC   L T  +L  P YRP   ++  P+    P  T   P     W
Sbjct: 98  HAYRSMGTVPLVPSPCYRPLVTVPLLPSPGYRPMGTVALVPSSCYRPLGTV--PWVPSPW 155

Query: 522 YTPLL 536
           Y PL+
Sbjct: 156 YRPLV 160


>SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
          Length = 229

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = +3

Query: 420 CPPIYRPRCRLSRTPALHLSPYITQ-----CNPLSSRLWYTPLLRPFCKKILSPVSPVTD 584
           C     P   L     LHLSP   Q     C+    +  Y P  RP CK   SPV+ +T 
Sbjct: 61  CKTCTSPVTALHARRVLHLSPPYMQDVYFTCHRPHMQDVYFPCHRPTCKTCTSPVTALTC 120

Query: 585 K 587
           K
Sbjct: 121 K 121


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 373 GTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSR 510
           G R  A+  Y  ARS  ++ +A  AA   R     AR+  +A+RSR
Sbjct: 236 GPRGRAS--YRSARSGRQRDSARKAAAGGRTADQGARSGDSASRSR 279


>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 352

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 182 SPVGT-PQPPAIPNQVSPPGPIPTQTFTNQHYVQLP 286
           +P G  P PPA P  + PP P P  TF N   +  P
Sbjct: 192 APPGVLPPPPAPPGALIPPPPAP-PTFNNNQNMGYP 226


>SB_3839| Best HMM Match : Lep_receptor_Ig (HMM E-Value=6)
          Length = 286

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 381 CPCRPYLRTRTVLCPPIYR--PRCRLSRTPALHLSPYITQCNPLSSRLWYTPLLRPFCKK 554
           C  RP+   R    PP+    P  R    P LHL P  T     S+ L+ + L+RP+C  
Sbjct: 181 CLVRPWCSARVRSSPPLASLDPGVRQEYGP-LHLLPRWTLVFGKSTVLFTSCLVRPWCSA 239

Query: 555 ILSPVSPV 578
            +    PV
Sbjct: 240 RVRSSPPV 247


>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
          Length = 577

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 188 VGTPQPPAIPNQVSPPGPIPTQ 253
           +G+  PP +P +V  PGPI  Q
Sbjct: 49  MGSKGPPGVPGEVGKPGPIGYQ 70


>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
 Frame = +3

Query: 225 YRHLDLSQLRLLPINIMYNYPGVESRNLAACPCRLSLIFHRIQSMQGLHRHPCPCR-PYL 401
           YRH  ++ + LL  +  Y +P +    L   PC        +      +RHP   R P +
Sbjct: 181 YRHPAITDIPLLQTSRYYRHPAITDTLLLQTPCYYRHPAIPLLQTPCYYRHPRYYRHPTI 240

Query: 402 RTRTVLCPPIYRPRCRLS-----RTPALHLSPYITQCNPLSSRLWY 524
               +L  P Y     ++     +TP  +  P IT    L +  +Y
Sbjct: 241 TDIPLLQTPCYYRHLAITDTLLLQTPCYYRHPAITDTLLLQTSRYY 286


>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 1737

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
 Frame = +3

Query: 225  YRHLDLSQLRLLPINIMYNYPGVESRNLAACPCRLS---LIFHRIQSMQGLHRHPCPCRP 395
            YRH  ++   LL     Y +P +    L   PC      L   R   +  L   P    P
Sbjct: 1579 YRHPAITDTLLLQTPCYYRHPAITDTPLLQTPCYTDIPLLQTSRFTDIPLLQTSPYYRYP 1638

Query: 396  YLRTRTVLCPPIYRPRCRLSRTPALHLSPY 485
             +    +L  P Y     ++ T  L  SPY
Sbjct: 1639 TITDTLLLQTPSYYRHPAITDTLLLQTSPY 1668


>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
          Length = 530

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 170 SEIDSPVGTPQPPAIPNQVSPPGPIP 247
           S   +P+    PPA+P   +PP  +P
Sbjct: 404 SRTQAPIAVHVPPAVPQHPAPPPAVP 429


>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1961

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 318  PCRLSLIFHRIQSMQGLHRHPCPCRP 395
            P +++  + R+  M+ LH+H  PC P
Sbjct: 926  PMQIAAQYGRVSVMEVLHKHGAPCDP 951


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 197  PQPPAIPNQVSPPGPIP 247
            PQPP +P+  +PP P P
Sbjct: 1167 PQPPPVPSVQAPPAPPP 1183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,429,039
Number of Sequences: 59808
Number of extensions: 342559
Number of successful extensions: 1685
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)