Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0116
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 258 LPINIMYNYPGVE 296
           LP+NI ++YPG E
Sbjct: 612 LPLNIRWSYPGEE 624


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 238 SRWRYLIRNRGRLWCAYRTVNFRL 167
           ++WR+L++    L C+ R +N RL
Sbjct: 68  NKWRFLLQCLEDLDCSLRKLNSRL 91


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 104 QYPQQRPITEVIG 142
           +Y Q +PI+EVIG
Sbjct: 951 EYYQNKPISEVIG 963


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 468 LHLSPYITQCNPLSSRLW 521
           L++SP  ++ N  +SR+W
Sbjct: 620 LYVSPVSSEYNQYNSRIW 637


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 468 LHLSPYITQCNPLSSRLW 521
           L++SP  ++ N  +SR+W
Sbjct: 620 LYVSPVSSEYNQYNSRIW 637


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 280 LYIMLIGKSLSWDRSRWR 227
           LYI+L+G    WD  + R
Sbjct: 102 LYILLVGYPPFWDEDQHR 119


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 195 HHNRPRFLIKYRHLDLSQLRLLPINIMYNYPGVE 296
           H N P FL  +       L L P   MY+  G E
Sbjct: 121 HDNSPSFLSDHSRDQEQNLYLTPSPQMYSSGGEE 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,762
Number of Sequences: 438
Number of extensions: 3119
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)