Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0116
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family...    33   0.12 
At1g69600.1 68414.m08005 zinc finger homeobox family protein / Z...    31   0.48 
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    29   2.6  
At1g73270.1 68414.m08479 serine carboxypeptidase S10 family prot...    29   3.4  
At4g34440.1 68417.m04894 protein kinase family protein contains ...    28   4.5  
At4g16140.1 68417.m02445 proline-rich family protein contains pr...    28   4.5  
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro...    28   5.9  
At5g38680.1 68418.m04677 kelch repeat-containing F-box family pr...    28   5.9  
At4g30820.2 68417.m04368 cyclin-dependent kinase-activating kina...    28   5.9  
At4g30820.1 68417.m04367 cyclin-dependent kinase-activating kina...    28   5.9  
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    28   5.9  
At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibit...    28   5.9  
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ...    28   5.9  
At2g09865.1 68415.m01022 hypothetical protein                          28   5.9  

>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
           protein
          Length = 523

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = +2

Query: 110 PQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPI 244
           PQQ+P  E  GS  F  LQE + D+    P P + P Q  PP  I
Sbjct: 160 PQQQPNDESQGSPVFVKLQEMQ-DATSSPPPPESKPGQADPPDNI 203


>At1g69600.1 68414.m08005 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 242

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +2

Query: 143 SQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQL 283
           S+N  FL    I SP GT  PP+    VS P P    T    H+V L
Sbjct: 84  SENLNFLTAPPISSPSGTESPPS--RHVSSPVPCSYYTSAPPHHVIL 128


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +2

Query: 104 QYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPTQTFTN 265
           QYPQQ P    +   + +  +E         P PP  P    PPG  P+Q + N
Sbjct: 336 QYPQQPP--PQLQHPSGYNPEEPPYPQQSYPPNPPRQPPSHPPPGSAPSQQYYN 387


>At1g73270.1 68414.m08479 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P07519) [Hordeum vulgare], glucose acyltransferase
           GB:AAD01263 [Solanum berthaultii]; contains Pfam
           profile: PF00450 Serine carboxypeptidase;
          Length = 441

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = +3

Query: 393 PYLRTRTVLCPPIYRPRCRLSRTPALHLSPYITQC-------NPLSSRLWYTPLLRPFCK 551
           PY     ++   +Y    R+ +    H+ PY T+C       N  +S+L+ + +L P C+
Sbjct: 232 PYAHGMALISDELYESLKRICKGEYEHVDPYNTECLKLLEEFNECTSKLYRSHILYPLCE 291


>At4g34440.1 68417.m04894 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 670

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 173 EIDSPVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPGG 292
           E  +PV  P PP  P+  SP  P P     N    +  GG
Sbjct: 96  EGSTPVTPPAPPQTPSNQSPERPTPPSPGANDDRNRTNGG 135


>At4g16140.1 68417.m02445 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 164

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 197 PQPPAIPNQVSPPGPIPTQT 256
           P PP  P+  SPP P PT T
Sbjct: 45  PSPPPPPSNPSPPPPSPTTT 64


>At5g48360.1 68418.m05975 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 782

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 143 SQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIP 247
           S+   +  ES +  P+    PP  P + SPP P P
Sbjct: 30  SRRLLYDYESPLPLPLSPISPPFFPLESSPPSPPP 64


>At5g38680.1 68418.m04677 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 357

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 423 PPIYRPRCRLSRTPA-LHLSPYITQCNPLSSRLWYTPLLRP 542
           P +Y+ R  L+RT   L++  Y+   NP  S  W+T  L+P
Sbjct: 53  PELYKERSLLNRTEGCLYVCLYL---NPFESPSWFTLCLKP 90


>At4g30820.2 68417.m04368 cyclin-dependent kinase-activating kinase
           assembly factor-related / CDK-activating kinase assembly
           factor-related contains similarity to CDK-activating
           kinase assembly factor MAT1 (RING finger protein MAT1)
           (Menage a trois) (CDK7/cyclin H assembly factor)
           (Swiss-Prot:P51950) [Marthasterias glacialis]
          Length = 178

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 421 ARQSTAPAAACHARRPSTSARTSHN 495
           A + TA  AAC A+ P T A TS N
Sbjct: 83  AEELTAALAACKAKPPQTDADTSSN 107


>At4g30820.1 68417.m04367 cyclin-dependent kinase-activating kinase
           assembly factor-related / CDK-activating kinase assembly
           factor-related contains similarity to CDK-activating
           kinase assembly factor MAT1 (RING finger protein MAT1)
           (Menage a trois) (CDK7/cyclin H assembly factor)
           (Swiss-Prot:P51950) [Marthasterias glacialis]
          Length = 178

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 421 ARQSTAPAAACHARRPSTSARTSHN 495
           A + TA  AAC A+ P T A TS N
Sbjct: 83  AEELTAALAACKAKPPQTDADTSSN 107


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 376 TRAHAARTYAPARSSARQSTAPAA--ACHARRPSTSARTSHNATRSRRDS 519
           T  H  R+  PA +     + P A  ACH RRP   A T+ +  + R  S
Sbjct: 18  TAGHHRRSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPS 67


>At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibitor
           family protein similar to extensin-like protein [Zea
           mays] GI:5917666
          Length = 264

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 167 ESEIDSPVGTPQP-PAIPNQVSPPGPIPTQTFTN 265
           ES  DSP  TP P P +   ++ P   P + +T+
Sbjct: 26  ESRSDSPFSTPAPAPEVMKPIASPANSPAEIYTD 59


>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
           recognition motif, Pfam:PF00076; contains AT-AC splice
           sites at intron 8
          Length = 339

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 185 PVGTPQPPAIPNQVSPPGPIP 247
           P G P PPA  +  +PP P P
Sbjct: 15  PAGAPPPPAAVSSAAPPHPPP 35


>At2g09865.1 68415.m01022 hypothetical protein
          Length = 339

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 167 ESEIDSPVGTPQPP----AIPNQVSPPGPIPTQTFTNQHYV 277
           E E   PVG P+      A+P ++  P PIP + +  Q Y+
Sbjct: 259 EDEFIDPVGGPRVGSSSLALPYELPSPTPIPIEPYVFQQYI 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,003,864
Number of Sequences: 28952
Number of extensions: 216520
Number of successful extensions: 1191
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)