Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0115
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    27   3.1  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    25   7.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   7.1  

>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 136 LQSRKHILIYFNRFRAPEIDTEHVKDRVLHMSLVYTDDATCFAT 5
           L  R+  + Y  R + P I  EHV ++    +L Y  D + F+T
Sbjct: 64  LYLRRRQVPYLLREKPPAILAEHVDEKKYQKALSYARDKSWFST 107


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 319 VNTPLTLRYKS*GLSIVTTAAPPFRPKRITASRQKQAGW 435
           V+T L L   + GLS V T +P FR ++   SR     W
Sbjct: 205 VSTQLHLEALALGLSRVYTISPAFRAEQSHTSRHLAEFW 243


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 577  VIKLILFTPMSFFHITSNGK 518
            ++K IL  PM FF  TS+G+
Sbjct: 983  MLKTILRAPMGFFETTSSGR 1002


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,090
Number of Sequences: 5004
Number of extensions: 51807
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)