Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0115
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         30   1.4  
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242...    29   4.2  
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664           28   5.5  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    27   9.7  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 383 HPSDRNALLLHGRNRQGGGTYPRGLTRGPATSNYANYNFGF 505
           H +D    LL GR R GGG + RGL   P  S      + +
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSRMTGARYPY 322


>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
            14324349-14324654,14324841-14325055,14325551-14325845,
            14325965-14326129,14326324-14327352,14333553-14333814,
            14334135-14334631,14338714-14340123
          Length = 1527

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 583  RQVIKLILFTPMSFFHITSNGK 518
            RQV+  IL  PMSFF  T +G+
Sbjct: 1041 RQVLSTILHAPMSFFDTTPSGR 1062


>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
          Length = 582

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 347 SPKVSV*LQRLPHPSDRNALLLHGRNRQGGGTYPRGLTRGPATSNYANYNFG 502
           S ++ + LQ LP P   +    HG    GGG    G T+    S  ANY+FG
Sbjct: 388 SQELRLSLQSLPDPMFHHQQHRHG----GGGGGGNGTTQQALFSGAANYSFG 435


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 380 PHPSDRNALLLHGRNRQGGGTYPRGLTRGPATSNYANYNFG 502
           PHP DR     +G  R+GGG+   GL  G  +     Y  G
Sbjct: 102 PHPQDR-----YGSGRRGGGSGRGGLVDGDRSGGGDRYGAG 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,559,470
Number of Sequences: 37544
Number of extensions: 340447
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)