Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0114
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_22879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 199 FKINNMI--KVIKRYTKKIKEDIVPKYNYKYTSGKRIA 306
           FKI ++I  KV+++ T   K+  VP   Y+  SG+ +A
Sbjct: 262 FKIKDVIDVKVLRKITPDTKDGFVPVLQYRKESGRTVA 299


>SB_22879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +2

Query: 269 NIIINIPLVNELLIICNYFLNYVNIFTVCNQLILI 373
           NIIINI ++N ++II N  +N + I  + N +I+I
Sbjct: 16  NIIINIIIIN-IIIIINIIINII-IIIIINIIIII 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,390,687
Number of Sequences: 59808
Number of extensions: 336357
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)