Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0114
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL009246-4|CAA15838.2|  368|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -3

Query: 136 IRYIITILSIRECVLWFFLPTTPKVL 59
           + Y+I+ L+IR+C ++FF P+T + +
Sbjct: 120 LHYLISFLAIRKCFVYFF-PSTERTI 144


>AL009246-4|CAA15838.2|  368|Caenorhabditis elegans Hypothetical
           protein C47F8.5 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 142 YGIRYIITILSIRECVLWFFLPTTPKVLK 56
           YG  +II+   I++   W +LP T  VL+
Sbjct: 71  YGTSFIISFADIQKTYKWLYLPETDIVLR 99


>AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical
           protein F56F4.4 protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = -1

Query: 315 HIISNSFTRGIFIIIFWNNVFLDFL-CIPFNNFYHIIYL-------KNNC*IAGYTQDKP 160
           ++ SN F     ++IF NN     L C  F   + ++Y        KNN  +  YT+ KP
Sbjct: 11  NVTSNHFNEKFKLLIFHNNYSQKRLDCYDFVRSFDLMYSVSQLNFNKNNSTLQIYTEKKP 70

Query: 159 NI 154
           N+
Sbjct: 71  NV 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,875
Number of Sequences: 27780
Number of extensions: 283832
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)