Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0114
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34410.1 68415.m04217 O-acetyltransferase family protein simi...    28   7.0  
At5g40290.1 68418.m04887 metal-dependent phosphohydrolase HD dom...    27   9.3  
At1g31230.1 68414.m03822 bifunctional aspartate kinase/homoserin...    27   9.3  
At1g29890.1 68414.m03653 acetyltransferase-related low similarit...    27   9.3  

>At2g34410.1 68415.m04217 O-acetyltransferase family protein similar
           to O-acetyltransferase (GI:17016934) [Homo sapiens];
           contains 11 transmembrane domains
          Length = 540

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 315 HIISNSFTRGIFIIIFWN-NVFLDFLCIPFNNFYHIIYL 202
           + I   F+   F  + W  N+F+ F CI  NN Y + Y+
Sbjct: 221 YYIRKDFSLARFTQMMWRLNLFVAFSCIILNNDYMLYYI 259


>At5g40290.1 68418.m04887 metal-dependent phosphohydrolase HD
           domain-containing protein similar to SP|Q60710
           Interferon-gamma inducible protein MG11 {Mus musculus};
           contains Pfam profile PF01966: HD domain
          Length = 448

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -3

Query: 445 GPFNNCFKYNFKTRVISGC----DLRAIYKN*LVADSKYINI 332
           GPF++ F+  F  +VISGC    +L +I     + D+ +I++
Sbjct: 117 GPFSHMFEREFLPKVISGCQWSHELMSINMIDYIVDTHHIDV 158


>At1g31230.1 68414.m03822 bifunctional aspartate kinase/homoserine
           dehydrogenase / AK-HSDH nearly identical to gb|X71364
           [PIR|S46497] aspartate kinase / homoserine dehydrogenase
           from Arabidopsis thaliana;  contains ACT domain
          Length = 911

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 396 LITRVLKLYLKQLLNGPYSFGCLNNKSCFG 485
           L  RV  +Y K+L++   SFG L  +SC G
Sbjct: 19  LAVRVPFIYGKRLVSNRVSFGKLRRRSCIG 48


>At1g29890.1 68414.m03653 acetyltransferase-related low similarity
           to O-acetyltransferase [Cryptococcus neoformans var.
           neoformans] GI:17063556
          Length = 470

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 315 HIISNSFTRGIFIIIFWN-NVFLDFLCIPFNNFYHIIYL 202
           + I   F+   F  + W  N F+ F CI  NN Y + Y+
Sbjct: 151 YYIRKDFSLARFTQMMWRLNFFVAFCCIILNNDYMLYYI 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,185,186
Number of Sequences: 28952
Number of extensions: 245924
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)