Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0113
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.7  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   3.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 120 GRDHDRVHEDRRGLYLH 70
           G+D   VH  RRGL LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 461 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 357
           ++  K NS +NGS D +      ++    + NG+K
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 497 LVTPVTSSNW*NRQLSKDNSASNGSGD 417
           L+   T+S+   R  +  NSASN SGD
Sbjct: 330 LLRHYTASSKNYRSATGGNSASNSSGD 356


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,712
Number of Sequences: 336
Number of extensions: 3053
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)