Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0113
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      273   6e-74
07_01_0756 + 5819367-5820038,5820847-5821005                          270   6e-73
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     77   1e-14
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    47   1e-05
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613...    30   1.7  
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    29   2.9  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    29   2.9  
11_01_0395 + 2999855-2999920,3000605-3002191                           28   6.8  
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541...    27   8.9  
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    27   8.9  
08_01_0312 + 2764744-2767390,2767632-2767990                           27   8.9  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  273 bits (670), Expect = 6e-74
 Identities = 122/159 (76%), Positives = 146/159 (91%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 317
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96

Query: 318 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 497
           KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 498 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKK 614
           IG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKK 195


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  270 bits (662), Expect = 6e-73
 Identities = 122/159 (76%), Positives = 145/159 (91%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 317
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99

Query: 318 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 497
           KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159

Query: 498 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKK 614
           IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKK 198


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 44/87 (50%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
 Frame = +3

Query: 357 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 533
           FV +GD + HI LGVKC+K  AT + GAIILA   +     G     I  KPHTV CKV 
Sbjct: 2   FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56

Query: 534 GKCGSVTVRLIPAPRGTGIVSAPVPKK 614
            K GSVTVR++  P G+ +V+  VPKK
Sbjct: 57  DKYGSVTVRMMLPPMGSSVVATRVPKK 83


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/63 (33%), Positives = 39/63 (61%)
 Frame = +3

Query: 285 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 464
           ++ V+++  V K  + G++  F+A V +GD  GH+G+GV  +KEV  AI  A +  + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230

Query: 465 LPV 473
           + V
Sbjct: 231 VTV 233


>07_03_0681 +
           20659789-20659839,20660030-20660170,20661294-20661399,
           20661625-20661806,20661888-20662113,20662198-20662624,
           20662844-20663189,20663271-20663849
          Length = 685

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 530 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 381
           DL  D   ++ +   +  + W NR +++    + G G    ALH  TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 419 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 303
           +F+A LHT  +M   V      +E C LS    F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693


>09_06_0198 -
           21496692-21496991,21497111-21497258,21497341-21497578,
           21497679-21497889,21497977-21498170,21498263-21498364,
           21498525-21499879,21501193-21501494,21501600-21501750,
           21501838-21502102,21502155-21502362,21502467-21502660,
           21502749-21502850,21503481-21503680,21504010-21504846,
           21505806-21506107,21506209-21506359,21506447-21506684,
           21506764-21506971,21507078-21507271,21507322-21507462,
           21513484-21514811,21515923-21516227,21516331-21516481,
           21516570-21516807,21516881-21517088,21517197-21517366,
           21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 521 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 363
           R  VW++D  TPVT+S+     LS  NS++    D    +   TN+T   A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157


>11_01_0395 + 2999855-2999920,3000605-3002191
          Length = 550

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 225 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 344
           +F   +++ ++IDF L   L D  + I+P+    R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276


>12_02_0387 +
           18453328-18453456,18453699-18453836,18454085-18454144,
           18461532-18462591,18463022-18463521
          Length = 628

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 503 KATHRPLQGHRQVWFCNSPADSCPSW 580
           K  H  L G  + W+ N PA+S  SW
Sbjct: 243 KVIHLALDGIARFWYFNLPANSIYSW 268


>11_01_0515 +
           4003167-4003229,4003318-4003738,4004224-4004367,
           4004474-4004556,4004661-4004775,4005309-4005400,
           4005558-4005612,4005689-4005834,4005888-4006001,
           4006149-4006342,4006985-4007112,4008526-4008583,
           4009800-4009876,4010214-4010263,4010336-4010515,
           4010633-4010731,4010816-4011133,4011221-4011281,
           4011693-4012781,4012951-4013005,4013133-4013291,
           4013923-4014442
          Length = 1406

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 141 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 275
           +  KE +P    G  V  G+    +++ + SLPIK++ +  FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849


>08_01_0312 + 2764744-2767390,2767632-2767990
          Length = 1001

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/42 (47%), Positives = 23/42 (54%)
 Frame = +1

Query: 337 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 462
           + HV   LLPLAT T        +A  +PLP  ALLSL S L
Sbjct: 5   AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,783
Number of Sequences: 37544
Number of extensions: 386038
Number of successful extensions: 1153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)