Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0113
         (616 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   317   9e-87
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   317   9e-87
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   317   9e-87
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   317   9e-87
X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   316   2e-86
BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p pro...    31   1.6  
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA...    31   1.6  
AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2 pr...    29   6.6  
AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon prot...    29   6.6  
AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB...    29   6.6  
AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA...    29   6.6  

>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  317 bits (778), Expect = 9e-87
 Identities = 150/159 (94%), Positives = 153/159 (96%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 317
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 318 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 497
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 498 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKK 614
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKK
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKK 195


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  317 bits (778), Expect = 9e-87
 Identities = 150/159 (94%), Positives = 153/159 (96%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 317
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 318 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 497
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 498 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKK 614
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKK
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKK 195


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  317 bits (778), Expect = 9e-87
 Identities = 150/159 (94%), Positives = 153/159 (96%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 317
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 318 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 497
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 498 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKK 614
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKK
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKK 195


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  317 bits (778), Expect = 9e-87
 Identities = 150/159 (94%), Positives = 153/159 (96%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 317
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 318 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 497
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 498 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKK 614
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKK
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKK 195


>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  316 bits (775), Expect = 2e-86
 Identities = 149/159 (93%), Positives = 153/159 (96%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 317
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 318 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 497
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 498 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKK 614
           IGKPHTVPCKVTGKCGSV+VRLIPAPRGTGIVSAPVP+K
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPRK 195


>BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p
           protein.
          Length = 823

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 144 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 1
           L C  H    D  R+H  ++GL +  V+ + REN   VH + ++  LLN
Sbjct: 359 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407


>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
           protein.
          Length = 1958

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 144 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 1
           L C  H    D  R+H  ++GL +  V+ + REN   VH + ++  LLN
Sbjct: 325 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373


>AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2
            protein.
          Length = 1711

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 412  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 516
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon protein.
          Length = 1695

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 412  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 516
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB,
            isoform B protein.
          Length = 1695

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 412  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 516
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA,
            isoform A protein.
          Length = 1711

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 412  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 516
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,428,466
Number of Sequences: 53049
Number of extensions: 645264
Number of successful extensions: 3008
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2511
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)