Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0112
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19150.1 68415.m02235 pectinesterase family protein contains ...    27   6.4  
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl...    26   8.5  

>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 242 TGLARASKFS*VEPVSSPTRPAVAGMAL 325
           TG+   +K++ +   SSPT+PAVA M L
Sbjct: 127 TGITFKNKYN-IASSSSPTKPAVAAMML 153


>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
           [Arabidopsis thaliana] GI:1360646; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain; identical to cDNA cyclin box
           (cyc2) partial cds GI:456019
          Length = 414

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 333 QRIVREKKKKTRGGARYPIRPI 398
           Q +VR  +KK RG  R P +PI
Sbjct: 83  QEVVRAVQKKARGDKREPSKPI 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,689,786
Number of Sequences: 28952
Number of extensions: 130628
Number of successful extensions: 266
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)