Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0110
         (573 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2EL02 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q5FQW8 Cluster: Capsule polysaccharide export inner-mem...    33   6.3  

>UniRef50_A2EL02 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 797

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 503 YCQRLLIILP*SQIAPNITIWTNINKDKQYSIYSKFDPKLQYKKSLTIKKS 351
           Y  + L+ +  +    N   W  INKD+Q+ +Y   D K + K S TI K+
Sbjct: 163 YTNQYLLSVCRATYKENPNYWAIINKDRQFKLYEIKDDKCEEKMSETILKA 213


>UniRef50_Q5FQW8 Cluster: Capsule polysaccharide export
           inner-membrane protein; n=3; Alphaproteobacteria|Rep:
           Capsule polysaccharide export inner-membrane protein -
           Gluconobacter oxydans (Gluconobacter suboxydans)
          Length = 266

 Score = 32.7 bits (71), Expect = 6.3
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 299 IKALHTLPRI*HT-HTLIDSFLLSNFSYIVVWGQI*NRLN 415
           I AL TL R+ H+ H  I +F L+ +S ++VW  + NRLN
Sbjct: 54  ITALWTLLRMSHSSHIPIVAFALTGYSTVLVWRNMPNRLN 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 475,732,552
Number of Sequences: 1657284
Number of extensions: 8034987
Number of successful extensions: 14097
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14096
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)