Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0110
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    27   9.5  

>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical
           protein F43D9.1 protein.
          Length = 1226

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 355 FFIVKLFLYCSLGS---NLE*IEYCLSLLIFVQIVI 453
           F ++ LF++C LGS   N    + CL ++IF+ +V+
Sbjct: 454 FCVIILFVFCFLGSFGINAYQSKPCLGIMIFITLVV 489


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical
           protein F43D9.1 protein.
          Length = 1226

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 355 FFIVKLFLYCSLGS---NLE*IEYCLSLLIFVQIVI 453
           F ++ LF++C LGS   N    + CL ++IF+ +V+
Sbjct: 454 FCVIILFVFCFLGSFGINAYQSKPCLGIMIFITLVV 489


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 304 FYY*FNAILCIIKKKVSFLHSFFVKRGTKFLL 209
           FYY     + I+   +  +HSF++ R T+ LL
Sbjct: 200 FYYMGGIAIVIVLSTIYAVHSFYIIRATRILL 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,540,896
Number of Sequences: 27780
Number of extensions: 212080
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)