Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0110
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26700.1 68414.m03252 seven transmembrane MLO family protein ...    29   2.2  
At5g59680.1 68418.m07482 leucine-rich repeat protein kinase, put...    29   2.9  
At5g53760.1 68418.m06680 seven transmembrane MLO family protein ...    28   3.8  
At4g36970.1 68417.m05239 remorin family protein contains Pfam do...    28   5.1  

>At1g26700.1 68414.m03252 seven transmembrane MLO family protein /
           MLO-like protein 14 (MLO14) identical to membrane
           protein Mlo14 [Arabidopsis thaliana]
           gi|14091598|gb|AAK53807; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 554

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = -3

Query: 70  RRKTLVRYETPSPLMK--IILWVMC 2
           R+ T V+Y T +PL+K  +++WV+C
Sbjct: 211 RQTTFVQYHTSAPLVKNRLLIWVIC 235


>At5g59680.1 68418.m07482 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 882

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 479 LP*SQIAPNITIWTNINKDKQYSIYSKF 396
           +P +  AP    W+++N D+QY +Y+ F
Sbjct: 253 IPTNASAPLTNEWSSVNPDEQYYVYAHF 280


>At5g53760.1 68418.m06680 seven transmembrane MLO family protein /
           MLO-like protein 11 (MLO11) identical to membrane
           protein Mlo11 [Arabidopsis thaliana]
           gi|14091592|gb|AAK53804; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 573

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 70  RRKTLVRYETPSPLMK--IILWVMC 2
           R+ T V+Y T +PL K  I++WV C
Sbjct: 216 RQTTFVQYHTSAPLAKNRILIWVTC 240


>At4g36970.1 68417.m05239 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 427

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 452 ITIWTNINKDKQYSIYSKFDPKLQYKKSLTIKKSL 348
           I  W N+ K K  +   K + KL+ KKS ++ K L
Sbjct: 325 IAAWENLQKAKAEAAIRKLEVKLEKKKSASMDKIL 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,289,293
Number of Sequences: 28952
Number of extensions: 173208
Number of successful extensions: 282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)