Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0109
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    30   0.23 
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    28   0.92 
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    28   0.92 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.2  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    27   1.2  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    27   1.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.6  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    26   2.8  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.7  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   4.9  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   6.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   8.6  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 342  NGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYG-GNGG 458
            NG+  R G+Q +G    Y    Y  R S TG   G  NGG
Sbjct: 882  NGNSYRGGHQSYGVRRSYQSQSYSSRQSYTGVTNGFANGG 921



 Score = 28.3 bits (60), Expect = 0.70
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 321  YPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNGGYPFRPY-PGYSD 491
            Y +   Y G  N F N G    P + GNG   R++ +    GG+ GY  R    GYS+
Sbjct: 904  YSSRQSYTGVTNGFANGG--VQPPWSGNGNFPRSNASYNSRGGHEGYGGRSRGGGYSN 959



 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 267  SQSQSSANEG-GGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYR 413
            S +    +EG GG +R G Y N      H +    +G+GY    + N  R
Sbjct: 938  SYNSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKGYGYQRESYNNNNR 987


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +3

Query: 303 YNRHGYYPNNYQYN--GHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNGGYPFRPY 476
           Y+ + Y  NN   +  G  N +GN G     G +G    + ++ +   YG  G       
Sbjct: 43  YSSNSYNDNNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGD 102

Query: 477 PGYS 488
            GYS
Sbjct: 103 AGYS 106


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 279 SSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYT 386
           SS   GG Y R GY    ++  G    +GN+  G+T
Sbjct: 506 SSGGRGGNYRRGGYGRGGFRRGG---GYGNRNRGFT 538


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
 Frame = +3

Query: 264 ISQSQSSANEGGGYNR--HGYYPNNYQY----NGHP--NRFGNQGHGYTPGYFGN----- 404
           +S S + +N     NR  HG +     Y    N HP  N++ +  HG+     GN     
Sbjct: 277 LSGSSTPSNTSSRSNRQNHGNFSEKRHYDRYGNSHPSYNKYSHYQHGFNYNNSGNNRNES 336

Query: 405 GY-RFRTSLTGTIYGGNGGYP 464
           G+ RFR S     Y   G YP
Sbjct: 337 GHPRFRNSRRN--YNNQGAYP 355


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 276 QSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGH 377
           Q+ +N G  ++ H +Y   + Y G+    G+ GH
Sbjct: 735 QNGSNGGHHHHHHHHYITGHVYGGYHKHSGSGGH 768


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 258 ITISQSQSSANEGGGYN-RHGYYPNNYQYNG-HPNRFGNQGHGYT 386
           +  S S  S +  GGY+ R+   PN  +Y G    R GN G G++
Sbjct: 424 VPFSPSMPSGSSRGGYHGRNPGGPNRQRYRGRRDGRGGNTGGGHS 468


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +1

Query: 196 TKAMGATRKDMGDITGAIPST*PLANRSLLLTKAVVTIAMDITQTTISIMDILTVSVTKG 375
           T     T+ D   +T  I ST  L + S   +  V +    +TQ   + +   TVS +  
Sbjct: 395 TSVTTTTKTDFDTVTTTIVSTSTLISASDSTSIIVSSYVSTVTQPASTRVQTTTVS-SIS 453

Query: 376 TATHQDTLGTATGSVPV 426
           T+  Q T   A+ SV V
Sbjct: 454 TSVKQPTASVASSSVSV 470


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 246 SPRDVPHILPGSPHSLGALGILHILDIVQAFDIISACGSSWVLLSKSVLD*APEGSP 76
           SP++  H+ PGS   +G + +  +L +V   DIIS   +      K  L  AP  +P
Sbjct: 333 SPKNNAHLSPGS---MGGVKVNQLLGVVSLTDIISVLYAH----MKGTLPPAPHSAP 382


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 300 GYNRHGYYPNNYQYNGHPNRFGNQGHGYTP 389
           G +R+GYYP +Y    +   +GN    Y P
Sbjct: 94  GPSRYGYYPQSYANQSY--TYGNNFGSYPP 121


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
 Frame = +3

Query: 330 NYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNG----GYPFRPYPG 482
           NY Y    N      + Y  G F       T+L  T YGGN     G+ ++P  G
Sbjct: 447 NYDYLAVYNDSITHMNSYVGGPFQQALSGITTLNNTWYGGNAFQIYGFDYKPGEG 501



 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 306 NRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNG 455
           N   Y  N +Q  G   + G   +GY   + G  Y +  S+ G+  G NG
Sbjct: 480 NNTWYGGNAFQIYGFDYKPGEGTNGYVSWFVGPNYTW--SMLGSAVGQNG 527


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +3

Query: 249 PINITISQSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRF 416
           P+ +  S S  + + G   N H    NNY  +   N  G     +    +GN   +
Sbjct: 504 PLGVRSSSSSHNNHNGNVRNLHSGSMNNYNTDSLLNHTGGHNEVHASPSWGNNLMY 559


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 117 LSKSVLD*A-PEGSP*TAVQLSTPMIQRSINL 25
           L KS+LD   P+    TAV LSTP    SI++
Sbjct: 104 LDKSMLDEKHPDSEDITAVSLSTPPFPESIDV 135


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 210 PHSLGALGILHILDI-VQAFDIISACGSSWVLLSKSVLD 97
           P  L     ++I DI V   DI+   GS W  + K+ LD
Sbjct: 392 PSVLQKTSFMYISDIYVNEDDIVCFQGSLWTQIDKNALD 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,600
Number of Sequences: 5004
Number of extensions: 45122
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)