Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0109
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 38 0.004
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 36 0.016
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 36 0.016
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 36 0.016
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 35 0.027
At2g25970.1 68415.m03117 KH domain-containing protein 34 0.063
At1g60390.1 68414.m06799 BURP domain-containing protein / polyga... 33 0.084
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 33 0.11
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 32 0.19
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 31 0.45
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 31 0.45
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 31 0.45
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 31 0.45
At2g05540.1 68415.m00586 glycine-rich protein 31 0.59
At2g05510.1 68415.m00583 glycine-rich protein 31 0.59
At2g05440.2 68415.m00575 glycine-rich protein 31 0.59
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 0.78
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 30 0.78
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 30 0.78
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 30 0.78
At4g15755.1 68417.m02398 C2 domain-containing protein similar to... 30 1.0
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 29 1.4
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 29 1.4
At5g61020.2 68418.m07656 YT521-B-like family protein contains Pf... 29 1.8
At5g61020.1 68418.m07655 YT521-B-like family protein contains Pf... 29 1.8
At2g37800.1 68415.m04641 DC1 domain-containing protein contains ... 29 2.4
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr... 29 2.4
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 28 3.1
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 3.1
At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 28 3.1
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 28 3.1
At2g05440.1 68415.m00574 glycine-rich protein 28 3.1
At1g67865.1 68414.m07749 expressed protein 28 3.1
At1g31750.1 68414.m03895 proline-rich family protein contains pr... 28 3.1
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 28 4.2
At3g07970.1 68416.m00974 polygalacturonase, putative / pectinase... 28 4.2
At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containi... 28 4.2
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat... 27 5.5
At5g45330.1 68418.m05564 expressed protein ; expression supporte... 27 5.5
At2g05530.1 68415.m00585 glycine-rich protein 27 5.5
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 27 7.3
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 27 7.3
At1g76960.1 68414.m08960 expressed protein 27 7.3
At5g46730.1 68418.m05757 glycine-rich protein 27 9.6
At4g20020.2 68417.m02930 expressed protein 27 9.6
At4g20020.1 68417.m02931 expressed protein 27 9.6
At4g18790.1 68417.m02775 NRAMP metal ion transporter 5, putative... 27 9.6
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 27 9.6
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 27 9.6
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 27 9.6
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 37.9 bits (84), Expect = 0.004
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 258 ITISQSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGT 437
IT++++QS + GGG R G Y+ G G G GY+ G G GY R+ G+
Sbjct: 77 ITVNEAQSRGSGGGGGGRGG-SGGGYRSGGGGGYSGGGGGGYSGG-GGGGYERRSGGYGS 134
Query: 438 IYGGNG-GY 461
GG G GY
Sbjct: 135 GGGGGGRGY 143
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +3
Query: 282 SANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNGGY 461
S GGGY+ G + G+ + G G GY G G + G+ GG GG+
Sbjct: 110 SGGGGGGYSGGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGGGGW 169
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 35.9 bits (79), Expect = 0.016
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +3
Query: 252 INITISQSQSSANEGG-GYNRHGYYPNNYQ--YNGHPNRFGNQGHGYTPGYFGNGYRFRT 422
+N+ Q + GG YN + Y Y G+ NRFG GY G G F +
Sbjct: 254 MNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFG-PAVGYEGGNGGGNSSFFS 312
Query: 423 SLTGTIYGGNGG 458
S+T ++G NGG
Sbjct: 313 SVTRNLWGNNGG 324
Score = 28.7 bits (61), Expect = 2.4
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +3
Query: 285 ANEGGGYNRHGYYPNNYQ--YNGHPNRFGN--QGHGYTPGYFGNGYRFRTSLTGTIYGGN 452
AN GY + + + G N GN G G +P Y GN RF ++ GGN
Sbjct: 246 ANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAV--GYEGGN 303
Query: 453 GG 458
GG
Sbjct: 304 GG 305
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 35.9 bits (79), Expect = 0.016
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +3
Query: 252 INITISQSQSSANEGG-GYNRHGYYPNNYQ--YNGHPNRFGNQGHGYTPGYFGNGYRFRT 422
+N+ Q + GG YN + Y Y G+ NRFG GY G G F +
Sbjct: 254 MNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFG-PAVGYEGGNGGGNSSFFS 312
Query: 423 SLTGTIYGGNGG 458
S+T ++G NGG
Sbjct: 313 SVTRNLWGNNGG 324
Score = 28.7 bits (61), Expect = 2.4
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +3
Query: 285 ANEGGGYNRHGYYPNNYQ--YNGHPNRFGN--QGHGYTPGYFGNGYRFRTSLTGTIYGGN 452
AN GY + + + G N GN G G +P Y GN RF ++ GGN
Sbjct: 246 ANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAV--GYEGGN 303
Query: 453 GG 458
GG
Sbjct: 304 GG 305
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 35.9 bits (79), Expect = 0.016
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = +3
Query: 252 INITISQSQSSANEGGGYNRHGYY---PNNYQYNGHPNRFGNQGHG-YTPGYFGNGYRFR 419
I T++ S+ G + +GYY P NY Y G NR G Y Y + +
Sbjct: 758 IKNTLNMKSSTGAASGLIDPNGYYRNVPGNYSYGG-VNRPRAPGPSPYRKAYDDDSSYYY 816
Query: 420 TSLTGTIYGGNGGYPFRPYPGYSDEDYNR 506
+ G P PYP +DYNR
Sbjct: 817 GKYNNSTQGTFNNGPRYPYPSNGSQDYNR 845
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.1 bits (77), Expect = 0.027
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +3
Query: 297 GGYNRH-GYYPNNYQYNGHPNRFGNQGHGYTPGYFGN--GYRFRTSLTGTIYGGNGGY 461
GGY G Y N Y+G N G G+G Y GN GY +G GG GGY
Sbjct: 140 GGYGGGAGGYGGNSSYSG--NAGGGGGYGGNSSYGGNAGGYGGNPPYSGNAVGGGGGY 195
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 33.9 bits (74), Expect = 0.063
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Frame = +3
Query: 261 TISQSQSSANEGGGY-NRHGY---------YPNNYQYNGHPNRFGNQGHGYTPGYFGNGY 410
T QSQ S G Y ++ GY P Y Y P +G+ G GYT G GY
Sbjct: 539 TYGQSQQSPGAPGSYGSQSGYAQPAASGYGQPPAYGYGQAPQGYGSYG-GYTQPAAGGGY 597
Query: 411 RFRTSLTGTIYGGNGGYP 464
S G GG GG P
Sbjct: 598 SSDGS-AGATAGGGGGTP 614
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Frame = +3
Query: 270 QSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTI--Y 443
Q QS GG + Y Y H + +G G GY +G + S G Y
Sbjct: 395 QQQSQQPSSGGSSAPPTDTTGYNYYQHASGYGQAGQGYQQDGYGAYNASQQSGYGQAAGY 454
Query: 444 GGNGGYPFRPYPGYSDE 494
GGY P ++
Sbjct: 455 DQQGGYGSTTNPSQEED 471
>At1g60390.1 68414.m06799 BURP domain-containing protein /
polygalacturonase, putative similar to polygalacturonase
isoenzyme 1 beta subunit GI:170480 from [Lycopersicon
esculentum]; contains Pfam profile PF03181: BURP domain
Length = 624
Score = 33.5 bits (73), Expect = 0.084
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Frame = +3
Query: 267 SQSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGY-RFRTSLTG--- 434
SQ+ ++ +E G + + NG PN F G+G G+ ++ S G
Sbjct: 224 SQTFTTYSENGNTGYQSFTSYSKNGNGAPNEFS--GYGTGSNVVNTGFTKYGESANGAND 281
Query: 435 --TIYGGNGGYPFRPYPGYSD 491
T YG NG P + GY D
Sbjct: 282 SFTSYGENGNVPVNEFKGYGD 302
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.1 bits (72), Expect = 0.11
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Frame = +3
Query: 291 EGGGYNRHGYYPNNYQYNGHP-----NRFGNQGHGYTPGYF--GNGYRFRTSLTGTIYGG 449
E GGY GY Y G P R+G G GY G + G G + G +YGG
Sbjct: 271 EFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYGGG-PGDMYGG 329
Query: 450 NGGYPFRPYPGYS 488
+ G P Y G S
Sbjct: 330 SYGEPGGGYGGPS 342
Score = 31.9 bits (69), Expect = 0.26
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Frame = +3
Query: 294 GGGYNRHGY-YPNNYQYNGHP-----NRFGNQGHGY--TPGYFGNGYRFRTSLTGTIYGG 449
GGGYNR GY Y G P +G G GY G +G GY +S G GG
Sbjct: 303 GGGYNRGGYSMGGGGGYGGGPGDMYGGSYGEPGGGYGGPSGSYGGGY--GSSGIGGYGGG 360
Query: 450 NGG 458
GG
Sbjct: 361 MGG 363
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 32.3 bits (70), Expect = 0.19
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 258 ITISQSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGY 410
IT++++QS + GGG R G Y+ G G G GY+ G G G+
Sbjct: 77 ITVNEAQSRGSGGGGGGRGGS-GGGYRSGGGGGYSGGGGGGYSGGGGGGGW 126
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 360 FGNQGHGYTPGYFGN--GYRFRTSLTGTIYGGNGGY 461
+G G+G GY G GY R + G YGG GGY
Sbjct: 18 YGGDGYGGGGGYGGGDAGYGGRGASGGGSYGGRGGY 53
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 360 FGNQGHGYTPGYFGN--GYRFRTSLTGTIYGGNGGY 461
+G G+G GY G GY R + G YGG GGY
Sbjct: 18 YGGDGYGGGGGYGGGDAGYGGRGASGGGSYGGRGGY 53
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 31.1 bits (67), Expect = 0.45
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 252 INITISQSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLT 431
I ++Q+ ++ GGYN+ Y P Q G P ++G++G + P + R S
Sbjct: 338 IKDVMNQNARPSSYSGGYNQPAYRP---QGPGGPPQWGSRG-PHAPHPYDYHPRGPYSSQ 393
Query: 432 GTIYG--GNGGYPFRPYP 479
G+ Y G GGYP + P
Sbjct: 394 GSYYNSPGFGGYPPQHMP 411
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 31.1 bits (67), Expect = 0.45
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 255 NITISQSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQ-GHGYTP 389
N T+S + +A GGG RHG+Y H N FGN G+TP
Sbjct: 216 NPTVSFTAMAAGGGGGA-RHGFYGGASSALSH-NHFGNNPNSGFTP 259
>At2g05540.1 68415.m00586 glycine-rich protein
Length = 135
Score = 30.7 bits (66), Expect = 0.59
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +3
Query: 288 NEGGGY-NRHGYYPN-NYQYNGHPNRFGNQGHGYT------PGYFGNGYR 413
N GGGY NR G Y N + Y +GN+G GY GY+G +R
Sbjct: 66 NPGGGYGNRGGGYRNRDGGYGNRGGGYGNRGGGYCRYGCCYRGYYGGCFR 115
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 30.7 bits (66), Expect = 0.59
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +3
Query: 270 QSQSSANEGGGYNRHGYYPNNYQY----NGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGT 437
+S+++ G + HG + Y +GH G GHG GY G G+ G
Sbjct: 33 ESEATVQPEGYHGGHGGHGGGGHYGGGGHGHGGHNGGGGHGLD-GY-GGGHGGHYGGGGG 90
Query: 438 IYGGNGGY 461
YGG GG+
Sbjct: 91 HYGGGGGH 98
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 30.7 bits (66), Expect = 0.59
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +3
Query: 288 NEGGGYNRHGYYPNNYQYNGHPNRFGNQG--HGYTPGYFGNGYRFRTSLTGTIYGGNGG 458
N GGG+ GY Y G +G G +G G++G G G YGG GG
Sbjct: 65 NGGGGHGLDGYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGG--------GGHYGGGGG 115
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 30.3 bits (65), Expect = 0.78
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +3
Query: 249 PINITISQSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGY 410
P N Q+ GGGY +GY P Y+ G+ + Y GY G GY
Sbjct: 351 PSNKQTQPDQAQYGGGGGY--YGYPPQGYEAYGYAPP-PQDPNAYYGGYAGGGY 401
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 30.3 bits (65), Expect = 0.78
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +3
Query: 294 GGGYNRHGYYPNNYQYN----GHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNGGY 461
GGGYN +G N G+ +RFG G G+ G G G + G GG GY
Sbjct: 258 GGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGF--GGEGYGRGGEGAYLGYPRGGGEGY 315
Query: 462 PFRPYPGY 485
PGY
Sbjct: 316 GGYGGPGY 323
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.3 bits (65), Expect = 0.78
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +3
Query: 276 QSSANEGGGYNRHGYYPNNYQYNGHPNRF---GNQGHGYTPGYFGNGYR--FRTSLTGTI 440
+ S GG G + Y+ NR+ N G GY P Y G+GY + G
Sbjct: 200 RGSGGAGGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPP-YGGSGYGTGYGYGSNGVG 258
Query: 441 YGGNGGY 461
YGG GGY
Sbjct: 259 YGGFGGY 265
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 30.3 bits (65), Expect = 0.78
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 255 NITISQSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTG 434
+IT++++QS + GGG +R G Y G R G GY+ G G GY R G
Sbjct: 78 SITVNEAQSRGSGGGGGHRGG-----GSYGGGGGR-REGGGGYSGG--GGGYSSRGGGGG 129
Query: 435 TIYG----GNGGY 461
+ G G GGY
Sbjct: 130 SYGGGRREGGGGY 142
>At4g15755.1 68417.m02398 C2 domain-containing protein similar to
cold-regulated gene SRC2 [Glycine max] GI:2055230;
contains Pfam profile PF00168: C2 domain
Length = 289
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 294 GGGYNRHGYYPNNYQYNGHPNRFG-NQGHGYTP-GYFGNGYRF 416
G G + NNY GH N + GY P GY +GY +
Sbjct: 207 GAGMTEQTGHANNYAQTGHANNYAPPPRQGYGPYGYVSSGYGY 249
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Frame = +3
Query: 294 GGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGN--GGYPF 467
GGG+ GY Y G G G G +G G +G YGGN GGY
Sbjct: 122 GGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAGGYGG 181
Query: 468 RPYPGYSDE 494
GY +
Sbjct: 182 SGAGGYGGD 190
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 29.5 bits (63), Expect = 1.4
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 255 NITISQSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPG---YFGNGYRFRTS 425
+IT++++QS + GGG +R G G R G G GY+ G Y G G R
Sbjct: 78 SITVNEAQSRGSGGGGGHRGG--------GGGGYRSGG-GGGYSGGGGSYGGGGGRREGG 128
Query: 426 LTGTIYGGNGGYPFR 470
G GG GGY R
Sbjct: 129 --GGYSGGGGGYSSR 141
>At5g61020.2 68418.m07656 YT521-B-like family protein contains Pfam
profile PF04146: YT521-B-like family
Length = 493
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/70 (34%), Positives = 30/70 (42%)
Frame = +3
Query: 294 GGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNGGYPFRP 473
G G +GYYP YQY H G G Y G Y++ T + GNG +
Sbjct: 89 GKGAYAYGYYPPAYQYPRH----GYTG-SYASGKTNLQYQYLTQQGRS--AGNG----QS 137
Query: 474 YPGYSDEDYN 503
Y GY D Y+
Sbjct: 138 YGGYMDNIYS 147
>At5g61020.1 68418.m07655 YT521-B-like family protein contains Pfam
profile PF04146: YT521-B-like family
Length = 495
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/70 (34%), Positives = 30/70 (42%)
Frame = +3
Query: 294 GGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNGGYPFRP 473
G G +GYYP YQY H G G Y G Y++ T + GNG +
Sbjct: 91 GKGAYAYGYYPPAYQYPRH----GYTG-SYASGKTNLQYQYLTQQGRS--AGNG----QS 139
Query: 474 YPGYSDEDYN 503
Y GY D Y+
Sbjct: 140 YGGYMDNIYS 149
>At2g37800.1 68415.m04641 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 396
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 303 YNRHGYYPNNYQYNGHPNRFGNQGHGYTPG 392
Y H YY + Y G + + NQG PG
Sbjct: 332 YYHHAYYNHGYTNQGQVHGYANQGQVQEPG 361
>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
domain; similar to Protein E6 (Swiss-Prot:Q01197)
[Gossypium hirsutum]
Length = 267
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 315 GYYPNNYQYNGHPNRFGNQGHGYTPGYFG-NGYRFRTSLTGTIYGGNGGY 461
GY + Y +PN +G + P Y G N R ++ T Y NG Y
Sbjct: 162 GYSNKDTSYYENPNTYGTEKREKEPAYRGYNNNVERQGMSDTRYMANGKY 211
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 315 GYYPNNYQYNGHPNRFGN 368
GY P +Y Y G P+++GN
Sbjct: 410 GYSPESYPYTGPPSQYGN 427
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 351 PNRFGNQGH-GYTPGYFGNGYRFRTSLTGTIYGGN--GGY 461
P R N G+ G PG FG +R R G I+GG GGY
Sbjct: 417 PMRDSNPGYSGRYPG-FGGRFRGRFGFVGGIFGGGRCGGY 455
>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
4B, putative/ eIF-4B, putative similar to eukaryotic
initiation factor 4B [Arabidopsis thaliana] GI:6739518
Length = 532
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = +3
Query: 351 PNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNGGYPFRPYPGYSDED 497
P R G Y G R R G+ GG GG RPY G D+D
Sbjct: 103 PGRLGGGFSSYGGRSGGRIGRDRDDSDGSWSGGGGGGGRRPYGGGFDDD 151
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 363 GNQGHGYTPGYFGNGYRFRTSLTGTIYGGNGGY 461
G +G G GY GYR R G GG GGY
Sbjct: 123 GTRG-GMVGGYGSGGYRGRRDQGGYNRGGGGGY 154
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +3
Query: 288 NEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNGGY 461
N GGG+ GY Y G +G G G++G G G YGG GG+
Sbjct: 65 NGGGGHGLDGYGGGGGHYGGGGGHYGGGG-----GHYGGG--------GGGYGGGGGH 109
>At1g67865.1 68414.m07749 expressed protein
Length = 75
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 315 GYYPNNYQYNGHPNRFGNQGHGYTPGYFGNG 407
G +PNNYQ G RF N + +PG +GNG
Sbjct: 29 GIWPNNYQSTG---RFEN-NNMTSPGNYGNG 55
>At1g31750.1 68414.m03895 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 176
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 345 GHPNRFGNQGHG-YTPGYFGNG 407
GH +G+ GHG Y G+FG G
Sbjct: 107 GHHGGYGHHGHGKYKRGFFGGG 128
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 27.9 bits (59), Expect = 4.2
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = +3
Query: 273 SQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGN 452
++S + GGG + G Y + Y R G +G GY G+ R+ G YGG+
Sbjct: 504 ARSGGSFGGGRSGGGGYGS---YGSSSGRSGGGSYG---GYGGSS--GRSGGGGGSYGGS 555
Query: 453 GGYPFRPYPGYSD 491
GG R Y G SD
Sbjct: 556 GGSSSR-YSGGSD 567
>At3g07970.1 68416.m00974 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase precursor [Cucumis
melo] GI:3320462; contains PF00295: Glycosyl hydrolases
family 28 (polygalacturonases); contains non-consensus
AA donor splice site at exon 2
Length = 439
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 306 NRHGYYPNNYQYNGHPNRFGNQGHGYTPG-YFGNGYRFRTSLTGTIY 443
NRHGY P + + + N FG + +G F + S TG +Y
Sbjct: 58 NRHGYAPRSSPRSFNVNTFGAKANGNDDSKAFMKAWEAACSSTGIVY 104
>At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 591
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 284 RRLRLANGYVDGIAPVMSPIS 222
R + +G+VDGI PV+SPI+
Sbjct: 69 RGWKYGSGFVDGIFPVLSPIA 89
>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
translocator, chloroplast precursor. [Spinach]{Spinacia
oleracea}
Length = 563
Score = 27.5 bits (58), Expect = 5.5
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 233 TSRGLSHQHNH*PIAVFC*RRRWLQSP--WILPKQLSV*WTS*PFR*PRARLHTRI 394
TS LSH H+H P + RR +SP I + LSV S P P R TRI
Sbjct: 14 TSTLLSHHHHHHPSRLSLLRRTSSRSPPSTISLRSLSVQPLSFPLLKPIPRFSTRI 69
>At5g45330.1 68418.m05564 expressed protein ; expression supported
by MPSS
Length = 571
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 321 YPNNYQYNGHPNRFGNQGHGYTPGYFGNG 407
Y Y N + N + N G+GY G G G
Sbjct: 538 YRGGYHNNNNNNYYSNSGYGYYSGGRGRG 566
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +3
Query: 336 QYNG-HPNRFG-NQGHGYTPG--YFGNGYRFRTSLTGTIYGGNGGY 461
QYNG H G N G GY G + G GY G +GG GY
Sbjct: 40 QYNGGHGGNGGYNGGGGYNGGGGHNGGGYNGGGGYNGGGHGGRHGY 85
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 297 GGYNRHGYYPNNYQYNGHPNRFGNQGHGY-TPGYFGN 404
GGY GY P Y G+P G HGY P + G+
Sbjct: 63 GGYPPAGYPPAGYPPAGYP-AHGYPSHGYPRPSHSGH 98
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 27.1 bits (57), Expect = 7.3
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = +3
Query: 267 SQSQSSANEGGGYNRHGY-YPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIY 443
S + G G GY P P+ + NQG+GY GY G+ + +
Sbjct: 305 SSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGY-GGYSGSDSGYGNQAAYGVV 363
Query: 444 GG--NGGYPFRPYPG 482
GG +GG P G
Sbjct: 364 GGRPSGGGSNNPGSG 378
>At1g76960.1 68414.m08960 expressed protein
Length = 52
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +3
Query: 423 SLTGTIYGGNGGYPFRPYP 479
SL GT YGG G YP R YP
Sbjct: 26 SLPGTPYGGPGPYP-RSYP 43
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = +3
Query: 258 ITISQSQSSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFG-NGYRFRTSLTG 434
+ Q+ GGG G Y G G G GY G GY S G
Sbjct: 28 LNYGQASGGGGHGGGGGSGGVSSGGYGGESGGGYGGGSGEGAGGGYGGAEGY---ASGGG 84
Query: 435 TIYGGNGG 458
+ +GG GG
Sbjct: 85 SGHGGGGG 92
>At4g20020.2 68417.m02930 expressed protein
Length = 406
Score = 26.6 bits (56), Expect = 9.6
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Frame = +3
Query: 294 GGGYNRHGYYPNNYQYNGHPNRFGNQG-HGYTPGYFGNGYRFRTSLTGTIYGGNGGYPFR 470
GGG + N QY P G G +G GY G T GG P
Sbjct: 208 GGGSGGPQNFQRNTQYGQQPPMQGGGGSYGPQQGYATPGQGQGTQAPPPFQGGYNQGPRS 267
Query: 471 PYPGYSDEDYNR 506
P P Y YN+
Sbjct: 268 PPPPY-QAGYNQ 278
>At4g20020.1 68417.m02931 expressed protein
Length = 419
Score = 26.6 bits (56), Expect = 9.6
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Frame = +3
Query: 294 GGGYNRHGYYPNNYQYNGHPNRFGNQG-HGYTPGYFGNGYRFRTSLTGTIYGGNGGYPFR 470
GGG + N QY P G G +G GY G T GG P
Sbjct: 208 GGGSGGPQNFQRNTQYGQQPPMQGGGGSYGPQQGYATPGQGQGTQAPPPFQGGYNQGPRS 267
Query: 471 PYPGYSDEDYNR 506
P P Y YN+
Sbjct: 268 PPPPY-QAGYNQ 278
>At4g18790.1 68417.m02775 NRAMP metal ion transporter 5, putative
(NRAMP5) identical to heavy metal transporter
[Arabidopsis thaliana]gi|12657269|emb|CAC27822; similar
to metal transporter Nramp3 [Arabidopsis thaliana]
gi|6468012|gb|AAF13278; member of the natural
resistance-associated macrophage protein (NRAMP) metal
transporter family, PMID:11500563
Length = 530
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 317 SMAIVTTAFVSRRLRLANGYVDGIAPVMSPISFLVAPIALVPLV 186
S AIV T FV+ + G +D + ++ + + P A++PL+
Sbjct: 394 SFAIVPTMFVAIMFNTSEGSLDVLNEWLNILQSMQIPFAVIPLL 437
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/66 (28%), Positives = 23/66 (34%)
Frame = +3
Query: 306 NRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGYRFRTSLTGTIYGGNGGYPFRPYPGY 485
N H + N G G GY G R R G+ GG GGY + GY
Sbjct: 376 NGHKVVVEEKRSTARGNYRGRSTFGVNTGYRNEGGRGR----GSFGGGRGGYGRTDFNGY 431
Query: 486 SDEDYN 503
+ N
Sbjct: 432 GNNRGN 437
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 357 RFGNQGHGY---TPGYFGNGYRFRTSLTGTIYGGNGGYPFRPY 476
RFGN G+ P F ++F T+YG GYP+ Y
Sbjct: 143 RFGNFSMGFGGLLPSLFN--FQFHGFHDATLYGSTPGYPYGGY 183
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +3
Query: 279 SSANEGGGYNRHGYYPNNYQYNGHPNRFGNQGHGYTPGYFGNGY 410
S N G Y G Y Y Y G G GY+ + G+GY
Sbjct: 286 SMVNPAGFYGYGGGYGYGYGYGGQMFNMGYGAGGYS--HMGSGY 327
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,413,706
Number of Sequences: 28952
Number of extensions: 256506
Number of successful extensions: 842
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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