Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0108
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.5  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   8.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 7   ERHEGTPGRGSQHDLHRDRSVSP 75
           E H G+P R S      DRS +P
Sbjct: 924 ETHAGSPCRNSASPASSDRSGTP 946


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 605 SVGGPRRSTQSGGSAAMNSFPVDEAATVPVETDPPRRPSP 486
           S  GP  S   GG +A      D+  + P    PP  PSP
Sbjct: 83  SSSGPFSSI-GGGISASKRQRTDDWLSSPSGNVPPLTPSP 121


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 88  SRRFSRISPGRETPDRNLPHYGPR 159
           SR   +   GRE   R  P+Y PR
Sbjct: 213 SRSKRQPKTGREDQTRRNPYYRPR 236


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +3

Query: 99  QSYQPWTGDARSEPAPLRTP 158
           + + PW    +  P+P  TP
Sbjct: 62  KGFHPWKKSPQGAPSPSSTP 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,392
Number of Sequences: 336
Number of extensions: 3178
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)