Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0108
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    28   0.98 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   1.3  
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    28   1.3  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    28   1.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    27   2.3  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.0  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    26   5.2  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   6.9  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   9.1  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    25   9.1  

>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 17  KELLGAAPSTTCTGTARSRPTTTDLEDSVVSALDGRR-QIGTCPTTDPDSRRREAKVQSR 193
           KEL  AA ST    T++   ++T   DS      G+R +  +  T D DS    ++++++
Sbjct: 68  KELKNAAISTRQKPTSKKSASSTSKHDSTGVKTSGKRSRESSTVTVDGDSHELPSRIKTQ 127

Query: 194 SS 199
            S
Sbjct: 128 KS 129


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 16  EGTPGRGSQHDLHRDRSVSPDYYGSRRFSRISPGRETPDRNLPHYGPRFPPK 171
           E     GS H     +S SP +  +R FS  +P   + +RN P Y P  P +
Sbjct: 315 EAVHANGSMHGSLHSKSPSPAFTANR-FSPAAPTTVSSERNAPPY-PSAPTR 364


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +1

Query: 301 ELQRVSNFSWDDW-RKRFLKFMNHK------KSRLTDLFRKMDKDNNGLIPRNEFID 450
           EL ++SN   D    K+F+ F+++K      +      FR  DKDN+G I   +F D
Sbjct: 46  ELAKLSNELGDAIDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFAD 102


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 358 FMNHKKSRLTDLFRKMDKDNNGLIPRNEFI 447
           F N +  R+   F K+D + +G I RNEF+
Sbjct: 18  FSNEEIERIRKRFIKIDANQSGSIDRNEFL 47


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 5    KSATKELLGAAPSTTCTGTARSRPTTTDL 91
            ++AT +L    P+TT   TAR++P   D+
Sbjct: 1684 ENATNDLKETFPTTTTISTARAKPGNNDI 1712


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 250 LAWERQRRLHERLAHLKE-LQRVSNFSWDDWRKRFLKFMNHKKSRL 384
           L+ + +R++HERL  LK+ +Q+     W    +R ++F+  +   L
Sbjct: 8   LSRDLERKIHERLVSLKDTIQQTEIEEWPVSTRRAIQFVQERDMSL 53


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 123 LPSRADTTESSRSVVVGRDRAVPVQVVL 40
           LPS+++ + +   VVVG   A+PV VVL
Sbjct: 230 LPSKSNKSSNHVGVVVGCSVAIPVGVVL 257


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 340 RKRFLKFMNHKKSRLTDLFRKMDKDNNGLIPRNEFIDGIVNTK 468
           +K++ +  N +   LTD F K+D D  G + +   I    ++K
Sbjct: 7   QKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFEDSK 49


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 259 ERQRRLHERLAHLKELQRVSNFSWDDWRK 345
           ER+ +L  +L  LKE Q   + +W++ RK
Sbjct: 372 ERREKLESKLTDLKEEQDKLSAAWEEERK 400


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 307 QRVSNFSWDDWRKRFLKFMNHKKSRLTDLFRKMDKDNN 420
           +R + F     R+R  +    KKSRLT  F++  K++N
Sbjct: 13  ERTNGFDHKHSRRRGSQNRISKKSRLTYKFKRASKEHN 50


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 13  HEGTPGRGSQHDLHRDRSVSPDYYGSRRFSRISPGRE 123
           H G P   S +DLH    +  +  G R  SR +   E
Sbjct: 567 HRGAPRNNSSNDLHAHGGMPVNMRGPRNTSRNNSSSE 603


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 376 SRLTDLFRKMDKDNNGLIPRNEFIDGIVNTKFDT 477
           + L D+  ++D D NG I   EF+  +     DT
Sbjct: 48  AELQDMINEVDADGNGTIDFTEFLTMMARKMKDT 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,919
Number of Sequences: 5004
Number of extensions: 51307
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)