Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0108
         (636 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   0.38 
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    26   0.87 
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           25   1.5  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    25   1.5  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   2.0  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   2.7  
EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.       24   4.6  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 0.38
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +1

Query: 103 RISPGRETPDRNLPHYGPRFPPKGSKGAEPEFRSPRVKQLWDRWR 237
           +I P R  P R  P  G R+P   S  A    RS R    W R R
Sbjct: 249 KIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRSTRPTS-WPRSR 292


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 0.87
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 490 LQPGMCRIWC*RCHR*THSSVSARCCPCPF 401
           L P   R+ C +CH+  H  +  RC  C F
Sbjct: 331 LPPSYDRL-CQQCHKALHLDIGLRCVVCDF 359


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 601 SGVRGVPPSQGEAPQ*TPSQSMRPLPFLSKQIRHG 497
           +G+R  PPS  + PQ  PSQ  +P    + Q+ +G
Sbjct: 275 NGLRA-PPSSQQQPQQQPSQQPQPSSQSNAQLTNG 308


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 5   KSATK-ELLGAAPSTTCTGTARSRPTTTDLEDS 100
           +S TK EL G+ PSTT       RPT  D  D+
Sbjct: 479 RSFTKGELFGSKPSTTTAIQFLGRPTYADRYDA 511


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 259 ERQRRLHERLAHLKELQR 312
           E  R+LH+R  H+K+LQ+
Sbjct: 741 EMTRKLHQRQQHMKKLQQ 758


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 273 PPLALPGEQPHVAPPVPQLLHAGRPEL 193
           PP A+PG QP + P  P      RP +
Sbjct: 233 PPGAVPGMQPGMQPRPPSAQGMQRPPM 259


>EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.
          Length = 661

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 528 SGLIDWEGVHCGASP*LGGTP 590
           S  I W G+H  A+P + G P
Sbjct: 136 SAAIHWHGLHQRATPYMDGVP 156


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,443
Number of Sequences: 2352
Number of extensions: 14560
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)