Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0107
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    28   1.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.6  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.6  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   8.1  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   8.1  

>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 154 LAALEANYKCRDAIIAVIKRC--FRKKLRIILEKLDKLFQYVI 32
           L+ L+ +  CR  +I++ KRC     K   +   LDKLF  ++
Sbjct: 358 LSPLDNSENCRKQLISIFKRCEIMLPKTCTVAHLLDKLFDSLV 400


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 177  DKLNFIVNQKLSLKYYVSLNC*FKKKIEIFILVLADPADFVVPQSINKRLLYKIN--LKQ 350
            D ++F+V  + +  + ++LN  F + +   +     P D +  +   + LL+ I   L +
Sbjct: 1122 DTMSFLVTLQTTYSFELTLNYDFSELLTKVVFPFLSPVDTITAEQEMRDLLHNIRQPLPR 1181

Query: 351  TKEIRPMGDTSKK 389
            +   +  G+  KK
Sbjct: 1182 SSSSKTFGEGIKK 1194


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 8/37 (21%), Positives = 23/37 (62%)
 Frame = +3

Query: 309 SINKRLLYKINLKQTKEIRPMGDTSKKKQNCYFYLVL 419
           S+N+++  +++ K +KE++ +    + K+ C   ++L
Sbjct: 409 SLNRKMAKELDRKNSKELQKINKVKRTKEECLSEIIL 445


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 246 KKKIEIFILVLADPADFVVPQSINKRLLYKINLKQTKEIRPMGDTSKKKQN 398
           + KI++  + LA+P D VVP S    L+ K      +E+      S +K N
Sbjct: 115 ENKIDLLDVALANPKDCVVPSS--GLLMPKEEFISNEEVGIPATNSSEKSN 163


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 447 NLLWISTNNSRPISKIGPAVLE 512
           N+LWIS N + P +K+  A  E
Sbjct: 746 NMLWISVNQTIPQTKLNEASTE 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,654
Number of Sequences: 5004
Number of extensions: 41516
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)